barSeed - Barley Seed Development Database

Probe CUST_7605_PI390587928

Source Contig U35_240

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7605_PI390587928	Hv_44K_v2	TTTGTACTACATGCTCAGAGAGTGTGGTTAACAAGCTGGGAGATGTGAAAGCCGTTTTTT	916	GeneList: royalblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.674	3.849	1.132	0.928	0.389	0.476
Raw	335.129	540.641	138.643	189.528	27.203	35.144

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_79596.1	351	2e-24	169 - 228	100	60 / 60	minus	ABC04620
MLOC	AK359745	2526	7e-23	2313 - 2372	98	59 / 60	plus	ABC04619 ABC04620
JLOC1	JLOC1_53009.1	346	8e-25	165 - 224	100	60 / 60	minus
Harvest21	ABC04620	684	3e-25	525 - 584	100	60 / 60	plus	ABC04620
Harvest35	U35_241	731	3e-25	628 - 687	100	60 / 60	plus
Harvest35	U35_240	1076	3e-25	917 - 976	100	60 / 60	plus

Contig Sequence (1076 bp)

>U35_240 1076 Hv_44K_v2
GTGGCGTCCGTGAAGAAGAGGAAGGCCAGGCTGCCCGCAGCCGCGGATCGCGGTGACCTT
GACCTTCACGAGGTGGCGGAAGACGACGACCTGCAGAAGCTGGCGCACACCAAAGGGCTC
AGGTGTCTGGACAAGGCCGCGGCGAAGAGCGGCGGCGACGGCCACGAGGGCCCGCGGAGT
CTGTGCACGGTGAGCGAGGTGGAGGCCGTCAAGATCCTGGCGCGCATGGTGCCCATCTGG
GTGACGTGCGTGCTGTACGCCGCGTCGCTTGGGCAGATGACCACCACCTTCATCCAGCAG
GGGATGACCATGGACAACAGGCTGGTCGGGAGGGTGAAGGTGCCGGTGGCGTCGATGGTG
TCGATCGAGGTGGTGTTCATGCTCGTGTGGGTGCTTCTGCACGACGCCGTCATCATGCCG
CTCGCCCGGAGGTGGGGCCGAGCCGGGAGCGCCGGGCTGTCTCAGCTGCAGCGGATGGGC
GTGGGGAGGGTCCTGGTGGTCTTGGCGATGGCGACGGCGGCGCTGGTGGAGAGCCGGCGG
CTGCGCGTCGCCGGCGCGGGCATGAAGATGGGCATCTGCTCCGCCTTCTCCTTCCTCGCG
CTGTCGCTGGGATTCTACGTCAACTCGGTGGTGGTGACGGCGGTGGCGGCGTTGAGGCCC
GGGTGGCTGGCGCCAAACCTCAACGAGGGGCACCTCGACTACTACTTCTGGCTGTGGGCC
GTCATCAGCGCCGGCAACCTGCTGCTCTACCTGCTGCTTGCCGCCCGGTACACGCCCAAA
CAAGTCCTCCGCCACTAGCCGCCGCCGCCGCCGCCGCCGCCGAGTTAGCTAATGGAGCAC
CGTACTATGAGGAGGAATGTTGACGTAACTTGGCCGCATTACGCGCCATAGAAGTCTCGC
TGAATATAACTCTTGTTTTGTACTACATGCTCAGAGAGTGTGGTTAACAAGCTGGGAGAT
GTGAAAGCCGTTTTTTTTTTTTAGCAATGGATGAATAATTTTCAGTTCTTTATCCTTAGG
ATGAATGTAACCGTAGTTTCTCGGTTATACTGGTCGCATAAAAAAAAAAAAAAAAA

Homology of Contig U35_240 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g42900.1	572	5e-85	protein\|peptide transporter PTR2, putative, expressed
Brachypodium v1_2	Bradi3g34600.1	582	4e-91
Arabidopsis v10	None