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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_7604_PI390587928Hv_44K_v2TTTGTACTACATGCTCAGAGAGTGTGGTTAACAAGCTGGGAGATGTGAAAGCCGTTTTTT627GeneList: greenyellow
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 3.8183.4451.0670.8660.3740.536
Raw 396.065560.483150.356204.21529.64845.649



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_79596.13512e-24169 - 22810060 / 60minus ABC04620
MLOCAK35974525267e-232313 - 23729859 / 60plus ABC04619 ABC04620
JLOC1JLOC1_53009.13468e-25165 - 22410060 / 60minus
Harvest21ABC046206843e-25525 - 58410060 / 60plusABC04620
Harvest35U35_2417313e-25628 - 68710060 / 60plus
Harvest35U35_24010763e-25917 - 97610060 / 60plus



Contig Sequence (731 bp)

>U35_241 731 Hv_44K_v2
TGCACGACGCCGTCATCATGCCGCTCGCCCGGAGGTGGGGCCGACCCGGGAGCGCCGGGC
TGTCTCAGCTGCAGCGGATGGGCGTGGGGAGGGTCCTGGTGGTCTTGGCGATGGCGACGG
CGGCGCTGGTGGAGAGCCGGCGGCTGCGCGTCGCCGGCGCGGGCATGAAGATGGGCATCG
CGTGGCAGGTGCCGCAGTTCGTGCTGGTGGCCGGGTCGGACGTGTTCTGCGGGATCGCGC
AGCTCGAGTTCTTCTACGGCGAGGCGCCGGTGTCGATGCGCAGCATCTGCTCCGCCTTCT
CCTTCCTCGCGCTGTCGCTGGGATTCTACGTCAACTCGGTGGTGGTGACGGCGGTGGCGG
CGTTGAGGCCCGGGTGGCTGGCGCCAAACCTCAACGAGGGGCACCTCGACTACTACTTCT
GGCTGTGGGCCGTCATCAGCGCCGGCAACCTGCTGCTCTACCTGCTGCTTGCCGCCCGGT
ACACGCCCAAACAAGTCCTCCGCCACTAGCCGCCGCCGCCGCCGCCGCCGCCGAGTTAGC
TAATGGAGCACCGTACTATGAGGAGGAATGTTGACGTAACTTGGCCGCATTACGCGCCAT
AGAAGTCTCGCTGAATATAACTCTTGTTTTGTACTACATGCTCAGAGAGTGTGGTTAACA
AGCTGGGAGATGTGAAAGCCGTTTTTTTTTTTTAGCAATGGATGAATAATTTTCAAAAAA
AAAAAAAAAAA



Homology of Contig U35_241 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os10g42900.15724e-59protein|peptide transporter PTR2, putative, expressed
Brachypodium v1_2Bradi3g34600.15825e-68
Arabidopsis v10None