barSeed - Barley Seed Development Database

Probe CUST_7602_PI390587928

Source Contig U35_243

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7602_PI390587928	Hv_44K_v2	CCCAACAGCCTGGTGTCAATTTTTGTAATAAGGGATAGTATTTTCCGGTAATGAATTATA	761	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51111.1	2147	2e-24	365 - 424	100	60 / 60	minus	ABC00120 ABC00610 ABC00897
MLOC	MLOC_51111.2	1062	2e-24	9 - 68	100	60 / 60	minus	ABC00120 ABC00610 ABC00897
JLOC1	JLOC1_32623.1	1107	8e-25	937 - 996	100	60 / 60	plus
Harvest21	ABC00610	906	3e-25	761 - 820	100	60 / 60	plus	ABC00610
Harvest35	U35_243	904	3e-25	762 - 821	100	60 / 60	plus

Contig Sequence (904 bp)

>U35_243 904 Hv_44K_v2
TCTGTCCTCCTTCGTCTTCAACCACCCTTGCAGATTGAAAATGGAGCGCCTCAGGACCGG
CTTCGACAAGTTCAAGACCGAGGTCTACGACAAGAAGCCGGACCTCTTCGGCCCCCTGAA
GGCCAACCAGGAACCTACGTACTTGTTGTTCGCGTGTGCCGACTCGCGCGTGTGCCCATC
GGTTACCCTGGGCCTGGAACCCGGCGAGGCCTTCACTGTCCGCAACATCGGCGCCATGGT
CCCGTGCTACTGCAAGAACAAGCACACCGGCGTTGGATCGGCCATCGAATACGCCGTCTG
TGCCCTCAAGGTGAAGGTCATTGTGGTGATTGGCCACAGTCGCTGTGGTGGAATCAAAGC
CCTGCTCTCACTCAAGGATGGCGCGGACGACTCCTTCCACTTTGTTGAGGACTGGGTCAG
GATCGGGTTCTCGGCCAAGAAGAAGGTGAAGGACGAGTGTTGTGACCTGCCTTTCGAGGA
CCAATGTGCCGTCTTGGAAAAGGAGGCCGTCAACGTGTCCCTCCAGAACCTGAGCACCTA
CCCGTTCGTCAAGGAGGGTGTGGCCAACGGAACACTCAAGCTGATCGGCGGCCACTACGA
TTTCGTCTCGGGCAAGTTCGACACATGGGAGCTGTAAATCAATCATCCCTCCCATTGCTC
AAATCCCAAATATATATACATACGTAAGTATATCAAAGATATATCGATCCATCGATATGG
ATGCGATGGAGTACCTACTCGTTATTTTCCAGTTGTGAATCCCCAACAGCCTGGTGTCAA
TTTTTGTAATAAGGGATAGTATTTTCCGGTAATGAATTATATTGTACTACTATGTGATGC
ATAATTTAATCGTCAAATGATCGAATACATCGGATATTATTTTAGTCAAAAAAAAAAAAA
AAAA

Homology of Contig U35_243 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g45274.3	263	3e-114	protein\|carbonic anhydrase, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi2g44856.1	203	2e-126
Arabidopsis v10	AT1G70410.2	280	2e-72	\| Symbols: ATBCA4, BCA4 \| beta carbonic anhydrase 4 \| chr1:26534167-26537457 REVERSE LENGTH=280