barSeed - Barley Seed Development Database

Probe CUST_7601_PI390587928

Source Contig U35_46055

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7601_PI390587928	Hv_44K_v2	GCTATAGGCATAGCTCGTTGCTTATATGATTTATGATTGTTCAATGGACAAGTTAATGGT	231	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_69270.3	796	2e-24	143 - 202	100	60 / 60	minus	ABC09253
MLOC	MLOC_69270.2	1793	2e-24	1172 - 1231	100	60 / 60	minus	ABC09253
MLOC	AK365787	2277	7e-23	1024 - 1083	98	59 / 60	plus	ABC09253
JLOC1	JLOC1_45889.2	1997	8e-25	592 - 651	100	60 / 60	plus
Harvest21	ABC45614	352	3e-25	232 - 291	100	60 / 60	plus
Harvest35	U35_46055	352	3e-25	232 - 291	100	60 / 60	plus

Contig Sequence (352 bp)

>U35_46055 352 Hv_44K_v2
AAGATGATGATATGGAAGGAGAAGATGAGATCACTGGGAATGGGGTCCCTACTGATCAAA
GACTGCGGAGGAGGTAATCATTTGTACCTTCTTGTGATTATATGCACCATCATGTTGTCT
CATCATGCATGAATGCCCCTTTTCCTCAAGTTAGCCCTTCCTTTAGAATCCCCCCTCATT
CATCCCTTTGCCATGTTACACAGAGTAATTCGTATGGGTGTTCTTATCTTGGCTATAGGC
ATAGCTCGTTGCTTATATGATTTATGATTGTTCAATGGACAAGTTAATGGTTAAAAAAAG
TATCCATATCATATTTGTTAGATGACTTGTCTGATACTGACGGAGTGATGGT

Homology of Contig U35_46055 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None