barSeed - Barley Seed Development Database

Probe CUST_7595_PI390587928

Source Contig U35_34084

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7595_PI390587928	Hv_44K_v2	TGGATGACCTAGGAATGTATTCCCGTCTATCCCTCCGTGAAAGTGTAATATTCACACTAT	642	GeneList: salmon MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.425	2.760	0.907	0.560	1.009	0.708
Raw	98.950	93.143	27.569	22.584	16.964	12.881

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_52704.1	860	3e-21	749 - 808	97	59 / 61	plus	ABC15111
JLOC1	JLOC1_33790.1	1230	2e-21	753 - 812	97	59 / 61	plus
Harvest21	ABC15111	777	6e-22	674 - 733	97	59 / 61	plus	ABC15111
Harvest35	U35_34084	724	3e-25	643 - 702	100	60 / 60	plus
Harvest35	U35_20881	777	6e-22	674 - 733	97	59 / 61	plus

Contig Sequence (724 bp)

>U35_34084 724 Hv_44K_v2
CCCTCCAGATGATGCTCGAGCGGCCGCTCAAGACTGTGAACATCGCCAATGGATCGGCGG
GAGGAGCTTATGCGCTGTCAAGGGGTCTGCTCACCATGATGATTGTTCCTTTTGGTATCT
GTGTCCTGTTCTACAGCCCTTTGTACCTTGTGTTCAAGCGCGACAGAGATAGTGCCAAGG
TGGCCAGCTTCAAAGACCAGGAGCTAACCTGAAGAGGTAGCTTCTTTAGGCTGACGGATC
AGAAAGGTTGAGTTCGTTCTTCAGGTTGATAGATAGATTCGGGCTGCTTGTGACGAGCCA
CTCGTTTTCCTCTTTTCTTGTGGGGAAGCCACTCGTTTTCAATGGCGATTTTTTTATTTA
GAAAAGGACGTTTTCAATGGCGATATATTCATCTCAAGAAGAAAATGCCAGCGGCCGCTT
ACTGTTCTACGTGCGGCTCAAGTCCAAGTACCTCGACCTCGACCTCACCACCGCCATGGC
CGGTGTCCCCGAGCCGCGCCGCCCCGAGTACGTCCTCGTCGCTAACGAGCTCGTCGACAA
TATGACCGAGTTCGACCGGTTTGTGCGGACTCCCAAGGTGTACGAGTCGTACCTCTACTA
TGAGAAGACCCTGAAGTCGCTGGATGACGTGGCAGAGTTCCTTGGATGACCTAGGAATGT
ATTCCCGTCTATCCCTCCGTGAAAGTGTAATATTCACACTATNAATATGATGATATCAAT
TGCT

Homology of Contig U35_34084 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None