barSeed - Barley Seed Development Database

Probe CUST_7593_PI390587928

Source Contig U35_8910

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7593_PI390587928	Hv_44K_v2	ATTGTCTAGGCAACCACTTTTCTTCAGAGAAACCAATCCGCAGCCAAGGAAGCACACTTT	621	GeneList: plum1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.276	0.445	0.820	1.443	1.426	1.863
Raw	10.849	26.528	43.477	112.612	41.099	59.871

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376270	2076	2e-24	679 - 738	100	60 / 60	plus	ABC12581
MLOC	MLOC_17800.1	595	2e-24	512 - 571	100	60 / 60	plus	None
JLOC1	JLOC1_12293.1	771	8e-25	514 - 573	100	60 / 60	plus
Harvest21	ABC16684	671	3e-25	612 - 671	100	60 / 60	plus
Harvest35	U35_8910	681	3e-25	622 - 681	100	60 / 60	plus

Contig Sequence (681 bp)

>U35_8910 681 Hv_44K_v2
AAACAGCTCTCGTCCTCCGTACAACAACCAAGCCGCAGAGAGTCAGAGGATGGTTCACTT
GCCACACGCGGGGAAGCTGCGGCGGGGGGTGAAGGAGGAGGCGGTGGACGACGACGGCGG
CGCCGCGGGGGCGGCCGGGGCTGAGGCGTCGCCGTTCCATAAGAGGTCCCGCCTCGCGCA
GCAGCAGCCGCAGCCGCAGCCGCAGCAATGGAGCACAGGCGGTGCTAGTGTGTCAAATCA
GCAGTCATCGCAACATGATTTCCTTGAGGAGCCTAGTCCACTTGGCTTGCGGCTTAAGAA
GAGCCCATCTCTCGTGGATTTGATCCAAATGAAGCTTGTGCAGGCCGGTAAGGCAAAAGA
CGCCCGGCATGGGGGCACTGCTAGTGCCTCAGAGAAATTAAAAGCCTCCAACTTCCCTGG
TTCTATTCTAAGAATCGGATCTTGGGAGTGGATATCAAGGTACGAAGGTGATCTGGTTGT
GAAATGCTATTTTGCAAAACACAAACTCGTGTGGGAAGTACTGGATGGTGGTCTCAAGAG
CAAAATTGAGATACAGTGGTCTGATATCTGTGCACTTAAGGTGGTTTGTCCAGAAACGGA
ACCTGGCACCCTGGAAATCGCATTGTCTAGGCAACCACTTTTCTTCAGAGAAACCAATCC
GCAGCCAAGGAAGCACACTTT

Homology of Contig U35_8910 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g04160.1	527	9e-108	protein\|expressed protein
Brachypodium v1_2	Bradi4g08640.1	525	3e-107
Arabidopsis v10	AT2G24100.1	466	4e-63	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G30780.1); Has 101 Blast hits to 101 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 95; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). \| chr2:10244921-10246715 FORWARD LENGTH=466