barSeed - Barley Seed Development Database

Probe CUST_758_PI390587928

Source Contig U35_45717

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_758_PI390587928	Hv_44K_v2	TTTGAGTTCCAACCCAGTCATTTTACTCTGTAACACAAATAGCAATGTGTGATTTGTTGA	45	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.734	1.605	1.012	1.076	0.519	0.665
Raw	766.814	1120.149	615.814	1049.482	175.097	240.593

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_39987.1	1308	4e-23	1103 - 1162	98	59 / 60	plus
Harvest21	ABC44910	575	3e-25	46 - 105	100	60 / 60	minus	ABC44910
Harvest35	U35_45717	575	3e-25	46 - 105	100	60 / 60	minus

Contig Sequence (575 bp)

>U35_45717 575 Hv_44K_v2
TTTTTTTTTTTTTTTTTACACAAAAACTGTGATCTATTACAAAATTCAACAAATCACACA
TTGCTATTTGTGTTACAGAGTAAAATGACTGGGTTGGAACTCAAAGATGCAGGCAACTAA
TTATTACCAGAAATCATTTATCAACGAAAAAATTATTACAAGAAATCAAATAATGAGTTG
CAAAACCGCTTACACTCTAATAATAACTAGACAACCAAAACTGCTTCCGCCTTCAAATTA
AGTGGCGGTGCCCAAAAAGGTTATCATCAAGACAGAGATGGACATAGCTCCGGATGATAC
TATCTGTAACAAACTAAAAAAGAACCACCAGCAGATAGCGGCAAGTTTTCACTGTGCTTT
CGCCAGCCCAAAATCCCTTTTAATTTGATCAAGTATGATCAGTCTGGGGCCAGGGGGAAT
CTTCACATCTTTCAAAGCACTGTCAGTAAGGAGGGGCAAGGTATGATCAGTAAGGAGACC
CTTCTTGAAATTCTTCTCATATTTCTCGAGACCCAGATTTTGTAACATGCTACTTGTCTT
GGCATAGTAGTTAGTTTCACTCACCCCCTCTGGCT

Homology of Contig U35_45717 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None