- Probe CUST_7588_PI390587928
- Source Contig U35_8913
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_7588_PI390587928 | Hv_44K_v2 | TTATACCCAGAGTTCCGTGGTAGTAGTATAGTCAGTCAACACAGCTGACTCTGTGGATCT | 585 | GeneList: red MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.259 | 1.688 | 1.455 | 0.808 | 0.224 | 0.265 |
| Raw | 2280.973 | 4739.723 | 3576.687 | 3243.483 | 298.745 | 394.205 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_3545.7 | 2743 | 2e-24 | 2598 - 2657 | 100 | 60 / 60 | plus | ABC21909 |
| MLOC | MLOC_3545.2 | 2923 | 2e-24 | 2720 - 2779 | 100 | 60 / 60 | plus | ABC21909 |
| MLOC | MLOC_3545.9 | 1273 | 2e-24 | 1204 - 1263 | 100 | 60 / 60 | plus | ABC21909 |
| MLOC | MLOC_3545.8 | 2722 | 2e-24 | 2653 - 2712 | 100 | 60 / 60 | plus | ABC21909 |
| MLOC | MLOC_3545.5 | 2902 | 2e-24 | 2741 - 2800 | 100 | 60 / 60 | plus | ABC21909 |
| MLOC | MLOC_3545.6 | 2905 | 2e-24 | 2744 - 2803 | 100 | 60 / 60 | plus | ABC21909 |
| MLOC | MLOC_3545.3 | 2939 | 2e-24 | 2736 - 2795 | 100 | 60 / 60 | plus | ABC21909 |
| MLOC | MLOC_3545.4 | 2942 | 2e-24 | 2739 - 2798 | 100 | 60 / 60 | plus | ABC21909 |
| JLOC1 | JLOC1_2132.2 | 2932 | 8e-25 | 2720 - 2779 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_2132.1 | 2929 | 8e-25 | 2717 - 2776 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC21909 | 646 | 3e-25 | 80 - 139 | 100 | 60 / 60 | minus | ABC21909 |
| Harvest35 | U35_8913 | 741 | 3e-25 | 586 - 645 | 100 | 60 / 60 | plus |
Contig Sequence (741 bp)
>U35_8913 741 Hv_44K_v2 GAAGCGAAACCATGCACGAGGCCAGAAGGTTTTCAGCTGGAGAGCTTGGCGAGACATGAA GTGGAGCAGCAAAGGCTAATGGAAGAAAGAGAGAGGATGGCGAGGGAAGAGGCTCAGAGG AGAATTGTCAGGGCACAGCCGATAATGAAAGAGGATCCTATTCCTCTTCCACAGAAGGAG CGGAAGCCTCTTACTGAAGTGCAACTGTTTGAACTGCATGTTGATGAGAGGGCGGTTCAA AGATCAGAATTCGATAACAAGATGAAGGAGAAGGAGATCGCTTACAAGAGGGCGCGAGAG GAAAACGAATTTGCACAGAAGATCGAGGAAGAGAAAGCGCTAAAGCAGCTGAGGAGGACC TTGGTGCCACAAGCACGGCCCCTCCCAAAGTTTGACAGGCCGTTCCGCCCACAAAGGTCG ATGAAGCAGGTGACCAGGCCCAAGTCGCCACAGCTTCAGGTGAATGAAAGAGGGGCGAGA AGGCACCCTTTCATGAGATAGATGATCTCAGTCTCCAGCTGGTTGTACCTCTTCTCTTTT TCCCTGACGTCCCCTATCAGTATTTGTTGTCATTCTTTCTGATCGTTATACCCAGAGTTC CGTGGTAGTAGTATAGTCAGTCAACACAGCTGACTCTGTGGATCTGAGATGGGGCCATTA CGGATTGCTGATTGATTGATGTTATTATGTGTATATTAATTCCAGTTTATGCATTTTGTG CATTAAAAAAAAAAAAAAAAA
Homology of Contig U35_8913 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os07g32390.1 | 793 | 7e-78 | protein|targeting protein-related, putative, expressed |
| Brachypodium v1_2 | Bradi1g26680.1 | 668 | 3e-81 | |
| Arabidopsis v10 | AT1G03780.3 | 790 | 6e-51 | | Symbols: TPX2 | targeting protein for XKLP2 | chr1:947555-951696 REVERSE LENGTH=790 |