barSeed - Barley Seed Development Database

Probe CUST_7585_PI390587928

Source Contig U35_8915

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7585_PI390587928	Hv_44K_v2	TTCAACGGCCACTGGAACATGAGCATGAACTATCTCGGCCTGCATTCCCTCCGGCACAAG	899	GeneList: darkgrey MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.222	0.263	1.221	2.179	1.325	1.038
Raw	30.114	46.268	220.345	591.470	133.527	113.604

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360312	2236	2e-24	1361 - 1420	100	60 / 60	plus	None
MLOC	MLOC_45138.1	2235	2e-24	1251 - 1310	100	60 / 60	minus	None
JLOC1	JLOC1_29296.1	2004	8e-25	1020 - 1079	100	60 / 60	minus
Harvest21	ABC24929	658	3e-25	584 - 643	100	60 / 60	plus
Harvest35	U35_8915	974	3e-25	900 - 959	100	60 / 60	plus

Contig Sequence (974 bp)

>U35_8915 974 Hv_44K_v2
CGCCCTCCTGGCTCTCCGTGCCCAACCCCACCAACTTCACCGACGACCTCCTCGCCCGCT
GGCTCACGCCCGGGGGCTCGCCCTGCCGCGACGCCCGCACGGCCAACATCTCCCTCCCGG
CTCTTGACGGCGCCGCGGCGGCGGGGGGTGTGACCGAGCTGAGCGCCGCCGAGATTTACG
TGTTCACCTTCTGGGCGCTCGACGGCACCGGCCTGCGGCGCTGCCTCGGCGGGGACTTCT
TCGAGATTGATCTCTCCGGGGCGGCGTGGAAGTCGCGCCCCCCCGTCGTGGACAACGGCG
ACGGCTCCTACACTTTCCGCCTCCAGGTTGCGCCCCGCTTCGCCGCGGGGGAGTTCCGCC
TCACCATCGTCCTCCTCTTCCGCAGCTTCGAGGGTCTCAAGTTCTCCTCCGCGAGGTTCA
AGTACCGCGCCGAGCTCCGCCGCCTTCCTCTACTGTTCCGCCCGGGCAACGCTTCGCTCC
CCGCCCTGGAGACTTGTCGGGCCGCCGACTTCGCGCGGGACCTCTGGTCCGGCCGGTGGA
CGCGGCTCGCCAGAAACGACAAGTGCGAGGATGTGGACGACGCCGGCCGGTACCGGTGCC
TGGAGCCGGAGCACCCATGCGAGGCACCGTGGTGCGACGGACCACTGGGCGCGCTGGAGA
GCAACGGATGGGTCTACTCGGCGCACTGCTCGTTCAAGCTCTTCACCGCCGACGCGGCGT
GGCGGTGCCTTGACGGCAAGTGGCTCTTCTTCTGGGGCGATTCCAACCATGTAGACACCA
TCCGGAACCTCCTGACCTTTGTTCTTGGCGTTGAGGACACATCCGCAGTGACACGCCGCT
TCGACGCCGTGTTCACGAATCCCAGCGGCGAGCCAGGCACCCTGCGGATCACAAGCATTT
TCAACGGCCACTGGAACATGAGCATGAACTATCTCGGCCTGCATTCCCTCCGGCACAAGG
GGTTCCGCCAGCTT

Homology of Contig U35_8915 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g32960.1	602	0.0	protein\|expressed protein
Brachypodium v1_2	Bradi2g26270.1	588	0.0
Arabidopsis v10	AT3G06150.1	594	8e-131	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19060.1); Has 61 Blast hits to 59 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). \| chr3:1861971-1863755 REVERSE LENGTH=594