barSeed - Barley Seed Development Database

Probe CUST_7581_PI390587928

Source Contig U35_8917

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7581_PI390587928	Hv_44K_v2	ATGTTTTTCCAGAGGCAGAATCCCACGCTTTGCATGTGGAAAAGCATACACAGGATGACA	528	GeneList: darkturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.410	0.497	1.174	2.047	1.057	1.147
Raw	48.706	91.562	191.954	548.214	99.634	114.178

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249977.1	1662	2e-24	614 - 673	100	60 / 60	plus	ABC15625
MLOC	MLOC_55776.1	1361	2e-24	605 - 664	100	60 / 60	plus	ABC15625
JLOC1	JLOC1_36019.1	1521	8e-25	604 - 663	100	60 / 60	plus
Harvest21	ABC17905	593	3e-25	485 - 544	100	60 / 60	plus
Harvest35	U35_8917	637	3e-25	529 - 588	100	60 / 60	plus

Contig Sequence (637 bp)

>U35_8917 637 Hv_44K_v2
GGGCGGACTCCACGACTCCGCCCGCGCGCCCCGTACCACGGCGGACGGAAAGGGAAGCTC
GCCGTGCCGGAGCGCCCCTGGTTGATTGAAGAGCGAGCGACGTATTACCTCCATCTTCGC
CCTCGGAGCGAGCGAGCAGTCCCCGCTCGGTCTCACCGCATCTCCGCAGCCACAAGGTGC
TGTACACCCCTTGCTTGCTAAGGTGCTGCTCATTTCACTGCATGACCATGATTTCTGAAG
ATGGAGAAATCTCAGACCTCCTCTCTGAACCAAATCTACCTGAAGAGCAGGATGTGACTT
CCGGATCCGATGATTTCTTGGCTGCTATTTTGGAATCAATCAAATCAAATGAGAAGGAAG
TTGAACTTTCACCTGAGGAGGCAGCTTGGGCTGATTCGTGTTTTGTGCAGACCTCTGAAC
TGTCAGATGTAGACTGGGGAGCAATGACGCACGCGTTGCTTGATAACCTTAGAGAACCAA
TGGAAGGTTCCTGTGATACCACTGAGGTCATGCATGAGCAAGGCACCCATGTTTTTCCAG
AGGCAGAATCCCACGCTTTGCATGTGGAAAAGCATACACAGGATGACAGTGTGGACATGG
AGCAACGAGGCAATAGTGATGCTGATGAGGATGCTAC

Homology of Contig U35_8917 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None