barSeed - Barley Seed Development Database

Probe CUST_7571_PI390587928

Source Contig U35_8921

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7571_PI390587928	Hv_44K_v2	TCATCATGCCAGCAAAAACCGTCAAATCATGTAGTTCGTGAGCCTCCTATTTCCGTTCCA	510	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64918.1	2058	2e-24	667 - 726	100	60 / 60	plus	ABC16901
JLOC1	JLOC1_42663.1	2017	8e-25	617 - 676	100	60 / 60	plus
Harvest21	ABC17742	782	3e-25	511 - 570	100	60 / 60	plus
Harvest35	U35_8921	784	3e-25	511 - 570	100	60 / 60	plus

Contig Sequence (784 bp)

>U35_8921 784 Hv_44K_v2
CCTCGCCTTCGACCGCCATTGACACCACCTGCATTCCCACTTCCCGTTCTTGTTCCTGCA
ACCCGAATGCGCTCTAATTCTTCCTCAGCTCCAATCCCAGAGTGAACAATCCTGTTCTTG
AGATAGAGCTGGGCACCATTCCGCTTCCGATTCCTTAGCCAAACCCTGAGAAAAAACCTA
CGAATCATGTAGAGCACGCCACCTCCAGCATCGGCCCAGATCCAACCCAGAAAGAAAACC
ACAAAAAAAAAATCAGTCACTTCCCTCCTAGCCAGTTAGTTTCAAAAGGCTGCAGGGCTG
CATATCTAGTAGGCTGGACTCACCCGCACCGAGTCCTTAGCGGAAAATCTAGAAAAGCCT
CCGGATCATGTAAATCTGCCCGCTTGCCACCCAGCCAAAAAAACCAACAAAAAAGAAAGT
TGACAGAAGCTCCAATCATGCATCGCTAGTCGTAGCCATCAGTCGCGGTCCTGTGATCCT
GCTGGAGATAATCCGCCCGTCGCCGTAGCATCATCATGCCAGCAAAAACCGTCAAATCAT
GTAGTTCGTGAGCCTCCTATTTCCGTTCCACCGCCGCATTCGATCGTCTCCAAAAAAAGA
GTGGGAGAAGAAGGGTTGGTGGTTTANCAGAGTCCAAAGTGGTGTGATGGAGGCGGCGGC
TGGTGCTGGGGCTGGGGCGGAGACGCCGAACCCGTCGGCGCCGGCGACGCCGGGGACGCC
GGCGCCGCTGTTCGCGGGGCCGCGGGTGGACTCGCTGTCGTACGAGCGCAAGTCGATGCC
GCGG

Homology of Contig U35_8921 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None