- Probe CUST_7566_PI390587928
- Source Contig U35_8924
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_7566_PI390587928 | Hv_44K_v2 | GTAGTGACCGACGACTTGTCTGTAACTTTGTTTGTAGAAGATGCTCTAGTCTACTTTTTT | 278 | GeneList: darkslateblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.517 | 1.633 | 1.147 | 0.821 | 0.382 | 0.468 |
| Raw | 1367.600 | 2251.670 | 1433.160 | 1623.682 | 261.517 | 344.872 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK365668 | 3710 | 2e-24 | 3565 - 3624 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_60690.1 | 3497 | 2e-24 | 152 - 211 | 100 | 60 / 60 | minus | None |
| JLOC1 | JLOC1_39596.2 | 3490 | 8e-25 | 3287 - 3346 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_39596.1 | 3414 | 8e-25 | 3211 - 3270 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_8924 | 494 | 3e-25 | 279 - 338 | 100 | 60 / 60 | plus |
Contig Sequence (494 bp)
>U35_8924 494 Hv_44K_v2 AGCCTGCAGGGCGGGGAGGTGAGGTCGAAGAGGGCGTCGAACCCAGCTAGGCCTTCGACG TCCGCGTCTTCCAGGGCCACAACGGCAAGCGCGGCCGCGAACAAGGCGGCGGCGGTTTCT GGTTCTAGGGTCACCAGGCAGCAGCAGGCTACCGTGGTGAGCAGCAACAAGACCAAGGGC TGGGTGAGGTAGGCAGACCCCCTACCTGGGCTGCGTTGCGTTTAGGCGTTGTAGTAGATG AGATGAGATGAGATGAGACGAGACGGGACGCCATTGTCGTAGTGACCGACGACTTGTCTG TAACTTTGTTTGTAGAAGATGCTCTAGTCTACTTTTTTTTACTGTACCCCTCCCTCTCCC TGGTAGAAGACGATGGATCGGAATTGGACGCTCAACCTTGAGCTGAGTTGAGCTCAATTA AGGCATCATCATCATCATCATAATCATGTGTTTGCTTGCAGTTGCAGTGAATCAGTCAAA AAAGAAAAAAAAAA
Homology of Contig U35_8924 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |