barSeed - Barley Seed Development Database

Probe CUST_7565_PI390587928

Source Contig U35_46074

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7565_PI390587928	Hv_44K_v2	GGTATGACACTGATAATGAAACCTCCCTCATCAACAGACCCATGGGTGTCAATGAAAATT	207	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_75034.7	1451	2e-24	97 - 156	100	60 / 60	minus	ABC05690
MLOC	MLOC_75034.1	4589	2e-24	1679 - 1738	100	60 / 60	minus	ABC05690
MLOC	MLOC_75034.3	728	2e-24	158 - 217	100	60 / 60	minus	None
MLOC	MLOC_75034.4	772	2e-24	158 - 217	100	60 / 60	minus	None
MLOC	MLOC_75034.5	2034	2e-24	288 - 347	100	60 / 60	minus	ABC05690
MLOC	MLOC_75034.6	2279	2e-24	288 - 347	100	60 / 60	minus	ABC05690
MLOC	MLOC_75033.6	3907	2e-24	3217 - 3276	100	60 / 60	minus	None
MLOC	MLOC_75033.13	4954	2e-24	1952 - 2011	100	60 / 60	minus	ABC05690
MLOC	MLOC_75033.4	2807	2e-24	2670 - 2729	100	60 / 60	minus	None
MLOC	MLOC_75033.5	2892	2e-24	2755 - 2814	100	60 / 60	minus	None
MLOC	MLOC_75033.1	4210	2e-24	3274 - 3333	100	60 / 60	minus	None
MLOC	MLOC_75033.2	3966	2e-24	3030 - 3089	100	60 / 60	minus	None
MLOC	AK375881	2541	6e-24	392 - 450	100	59 / 59	plus	ABC51352
JLOC1	JLOC1_50031.6	827	8e-25	609 - 668	100	60 / 60	plus
JLOC1	JLOC1_50031.5	2450	8e-25	2258 - 2317	100	60 / 60	plus
JLOC1	JLOC1_50031.4	688	8e-25	496 - 555	100	60 / 60	plus
JLOC1	JLOC1_50031.3	732	8e-25	540 - 599	100	60 / 60	plus
JLOC1	JLOC1_50031.2	736	8e-25	544 - 603	100	60 / 60	plus
JLOC1	JLOC1_50031.1	674	8e-25	496 - 555	100	60 / 60	plus
Harvest21	ABC45657	267	3e-25	208 - 267	100	60 / 60	plus
Harvest35	U35_46074	267	3e-25	208 - 267	100	60 / 60	plus

Contig Sequence (267 bp)

>U35_46074 267 Hv_44K_v2
TCCTCAGGCACCTCTACCACCTCTTTGACAAAAACTGGGCGCCCATCGANGACGAGAGCT
ACCGCATCCTTGCTGACACCATCCTGGATGCCCAAAACAATCAACCAATGCCTGCCGCTG
CCCGTCATATGACGGGCCAAGAGTCCGAACCTCACAACTCAACGTCGGCCACACCAGATC
CAGATGACCAACACCCTTCCGCTGCTCGGTATGACACTGATAATGAAACCTCCCTCATCA
ACAGACCCATGGGTGTCAATGAAAATT

Homology of Contig U35_46074 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None