barSeed - Barley Seed Development Database

Probe CUST_7562_PI390587928

Source Contig U35_46076

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7562_PI390587928	Hv_44K_v2	CAGTTCAGCAGAAGATTTGATAAATGCAGTATTAACTGCATTGGAGCGGCTATCAGTTGA	297	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66727.2	4387	2e-24	3753 - 3812	100	60 / 60	minus	ABC18972
MLOC	MLOC_66727.1	4388	2e-24	3753 - 3812	100	60 / 60	minus	ABC18972
JLOC1	JLOC1_44010.2	3689	8e-25	583 - 642	100	60 / 60	plus
JLOC1	JLOC1_44010.1	3532	8e-25	426 - 485	100	60 / 60	plus
Harvest21	ABC45659	360	3e-25	298 - 357	100	60 / 60	plus
Harvest35	U35_46076	360	3e-25	298 - 357	100	60 / 60	plus

Contig Sequence (360 bp)

>U35_46076 360 Hv_44K_v2
CACTGCAGGGAGATAAGAGCAGTACGCACAATGCTTGAAGATTTCTTTACTCTGACTGAG
ATGAAGGATGGCATTTCAACTACGGCAAGAATAGCAGAGCTGGTTTCCGAGGTCCAAAAG
CTGAGAGATGCTGCTGATTTTAGTGCGGTGGGAGTTCATAAGGCAGTGTTCAACAGCTGC
AAAAACACTTGGATCTACCAACATTGAAGAATGTCTTCAGCATTTTGTTCAGCTAAATGG
TATTGGTTATCTCAATCAGTGGCTTCAAGATGCTCAAAACTGCAGCAAGGAAGTCAGCAG
TTCAGCAGAAGATTTGATAAATGCAGTATTAACTGCATTGGAGCGGCTATCAGTTGATGA

Homology of Contig U35_46076 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None