barSeed - Barley Seed Development Database

Probe CUST_7561_PI390587928

Source Contig U35_8928

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7561_PI390587928	Hv_44K_v2	TTTGGAAGATGTGACAGTTTACATTTCTGAACTTCTGATATTAAGGCGACCTGATTAATC	912	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.023	1.297	1.261	1.122	0.582	0.652
Raw	110.535	221.420	186.575	263.820	46.630	58.119

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC17692	989	3e-25	913 - 972	100	60 / 60	plus	ABC17692
Harvest35	U35_8928	989	3e-25	913 - 972	100	60 / 60	plus

Contig Sequence (989 bp)

>U35_8928 989 Hv_44K_v2
CTCCATGGTGGAAAAATCCTTCTGCTAAATCGATCTCTCTCAGTCATGATGGGAGCCAGC
TTATCAGACAAATAAGTACAGACGATACTACTTTATCAGATCCAGTGACCGCCTCAGAGT
CTTTCATCAATGAAATACCAGAAGGGCCAGAATCTCCTCTCCCATCACTCAAACAGCTAA
CCAGGGCTGAGCCATCTCCTCTGCTCACTGTTCACTTGGTTGATATTCTCTACAGTTACT
GCTTCACGCTTCGCCTCTACAATGGTGATTGGCAGTCTGATCTTTTGGGTGCTTCAACTG
TTGCCTTGTCTATGTCGAAAGTCATGGGGGACGGCGCTAAACCTGAGGCAGTATCTGAAG
CGCTCACGACGTGCATAGAGGAGACATGCTCTCCTGTTTACCGACACACCGGAGGTTTCA
GGTTTGCTATTGGACTTGTGGATGATATCGTCAGAATCCTCTCCCTAGGAGGCAATGCAG
TGGTTTGTGCATTGTGTGACTTCCACAGGCTCATCCAAGCTGGCGAGAGCATCCTCAAGG
AAGACAAAATGGGTGAGGCAGAAAAGGCGCGGAGCTTCAAAAAGCTCCATGCCGCCGGTA
GGAAGCTGTTCTTCATGACATGCTGGGCTCATGAGCAGCCAAGTGAGGTGTGGCCGTCGT
TGGCTCGCATCGTTGAGGTGCAGAAAGCAGCTCTTGAGGAGCTGGACGGTGGAAGCGGAC
TGAGGAAGGCAGGTAGAAAGAACAACCCGCAGTCCAAGGTTCTTATTGAGGAGGTGTAAG
CCTGTCAACGCAGTACTGCTGGAATAACCACACTTTGTTGTTTCGGCACCTTGTGGTATC
TCTCAGTTGTATCATTTGATCCTTGTTTTCTTCACCTTCAAGTGCAGTGGCTTAAATGTA
TAAATTGTCATCTTTGGAAGATGTGACAGTTTACATTTCTGAACTTCTGATATTAAGGCG
ACCTGATTAATCAAAAAAAAAAAAAAAAA

Homology of Contig U35_8928 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g37640.2	349	4e-139	protein\|HIT zinc finger domain containing protein, expressed
Brachypodium v1_2	Bradi3g31377.1	371	2e-151
Arabidopsis v10	AT5G63830.1	405	2e-66	HIT-type Zinc finger family protein \| chr5:25543585-25544802 REVERSE LENGTH=405