barSeed - Barley Seed Development Database

Probe CUST_7558_PI390587928

Source Contig U35_8930

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7558_PI390587928	Hv_44K_v2	CCAGCGAGATAATCATTGGTTGTGCTATCGTTGAGGTGAAATGTCGCATTGTTCCATAAA	863	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_36701.1	613	2e-23	78 - 135	100	58 / 58	minus	ABC16937
MLOC	MLOC_36701.2	630	2e-23	78 - 135	100	58 / 58	minus	ABC16937
MLOC	AK375029	1311	9e-22	1257 - 1311	100	55 / 55	plus	ABC16937
JLOC1	JLOC1_23672.1	678	1e-23	514 - 571	100	58 / 58	plus
Harvest21	ABC16937	937	3e-25	864 - 923	100	60 / 60	plus	ABC16937
Harvest35	U35_8930	937	3e-25	864 - 923	100	60 / 60	plus

Contig Sequence (937 bp)

>U35_8930 937 Hv_44K_v2
GGAGGGTTCGTGGGGTACAGGATGGCGGCGATGTACCCGGACGCCGTGGAGAGGGTGACT
ATGGTGTGCGCCGGCGTCTGCCTGGAGGAGAAGGACCTCGCTGAGGGTCTGTTCCCTGTG
GCCGGGGTCGATGAGGCGGCAGCGCTGCTGGTGCCACGGCGGCCGGAGGAGGTGCGGCGC
CTGGTCAGGCTCACATTCGTGAAACCGCCAATCATCATGCCGTCGTGCTTCCTTTGGGAC
TACATTAAGGTGATGGGCTCAGATCATATCGAGGAGAAGACTGAGCTACTACACGCTTTG
ATTAGTGGGAGGCAACTTTCTACTCTTCCAAAACTACGTCAGAAGACGCTGATAATTTGG
GGGGAGCAAGATAAGGTGTTCCCGATGGAATTGGCTCACAGATTGAAGAGGTTCGAAGAT
GTTAACCTTTCAATGAACATTTCGACCGCACGAGTTTGCGGCGCCTGCATCCCTTGAAAC
TTGAAACTAACCACCGTGCCGACATGTGAACAAATTGGCAGGCATCTGGATGGGAACTCT
CGGTTGGCAGTTATACACAACGCTGGGCACGCAGTCAATCTTGAGAAGCCTACAGAGGTG
TGCAAGAGCATCATCGAGTTCTTCCAAGAGCCGGTCCCCGAAGCTTCAAACGACGAAAGG
GTGTAGTAGGTGTGACTCTCATCGAAGATCGAAGCTGCGGATGGTGTCTTCTTCGCTGGG
CATCGGCATTGTGGTCAAAACTGACACTGGAAGAGGAGAGGGAGAGGGGGGTCATCGTAG
CGTTCTCGCCGTTCTTCGCGGAAAAAATACCTGATGTGATATTTCCTCGAGCAGTGTAAT
CATCGGTTATGTGAACTGGCATGCCAGCGAGATAATCATTGGTTGTGCTATCGTTGAGGT
GAAATGTCGCATTGTTCCATAAAAAAAAAAAAAAAAA

Homology of Contig U35_8930 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g27110.1	339	2e-71	protein\|hydrolase protein, putative, expressed
Brachypodium v1_2	Bradi1g21350.1	326	1e-93
Arabidopsis v10	None