barSeed - Barley Seed Development Database

Probe CUST_7551_PI390587928

Source Contig U35_46084

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7551_PI390587928	Hv_44K_v2	GATCTGCCAAACAAACGTGTCTTCATGTTCTCTAGGCTCTAAGAATTGTTGGTGTTTTTT	62	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.371	1.825	1.594	0.810	0.241	0.309
Raw	2519.217	5252.407	3944.413	3289.407	327.061	459.357

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54110.3	2654	2e-24	2420 - 2479	100	60 / 60	minus	ABC08522 ABC40949 ABC45673
MLOC	MLOC_54110.5	2502	2e-24	2268 - 2327	100	60 / 60	minus	ABC08522 ABC40949 ABC45673
JLOC1	JLOC1_34819.4	3971	8e-25	1367 - 1426	100	60 / 60	plus
JLOC1	JLOC1_34819.3	4020	8e-25	1367 - 1426	100	60 / 60	plus
JLOC1	JLOC1_34819.2	3759	8e-25	1367 - 1426	100	60 / 60	plus
JLOC1	JLOC1_34819.1	3953	8e-25	1367 - 1426	100	60 / 60	plus
Harvest21	ABC45673	585	3e-25	63 - 122	100	60 / 60	minus	ABC45673
Harvest35	U35_46084	585	3e-25	63 - 122	100	60 / 60	minus

Contig Sequence (585 bp)

>U35_46084 585 Hv_44K_v2
TTTTTTTTTTTTTTTTGATGGGGAACCATGTTTTCTTGTAATAATTTATCGGGGAAATGT
AAAAAAAACACCAACAATTCTTAGAGCCTAGAGAACATGAAGACACGTTTGTTTGGCAGA
TCATGCGAGATGGCATGCATCACTACGAATCACGCGCCGAAAGGGACGCCGATGAGATGA
GACGATCAATCAAGCAGAGTTGTTACTGCGGCTGCGGCTGCGGCTGCAACTGCGAGACGA
TCTTGGCCACGGCCTGCGCCGAGATGGGCGACAGGCTCAGCGCGCACAGGCTCTCCCACG
CCGCAGCCACGGCAGACGGCTCCTCCTTCTTCTCCTTCTCCTCTTCTTCCTCATTCTCCT
TCACCTCCTCCTGGAGCTGCTCATTCTCCTTCTTCTCCTGCTCCTTCTCAACGGCCTCCT
TGAAGAAGGCGGCGTGGGTGGAGCCAACGATGCTGCGGGCGGCCTCGCGCGCCTCCGGCA
GCCGGTCGTTGAGCAGCTCCGCGGCCACCTGCAGCAGCGCCGGCAGCCCGAACTCCTTCA
TCGTCTCCACGTCCATCCTGGCGGCGCAGTGCGCCATGGCGACGG

Homology of Contig U35_46084 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None