barSeed - Barley Seed Development Database

Probe CUST_7549_PI390587928

Source Contig U35_46085

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7549_PI390587928	Hv_44K_v2	AGATCAATCAGAGGTCCTTCTTCATCTACATCAACAACCAGACAGCACAGGAGCAAATGG	220	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_32662.1	3145	2e-24	1905 - 1964	100	60 / 60	minus	ABC14350
MLOC	MLOC_32662.2	3287	2e-24	1827 - 1886	100	60 / 60	minus	ABC14350
JLOC1	JLOC1_21265.1	3463	8e-25	1280 - 1339	100	60 / 60	plus
Harvest21	ABC45674	306	3e-25	221 - 280	100	60 / 60	plus
Harvest35	U35_46085	306	3e-25	221 - 280	100	60 / 60	plus

Contig Sequence (306 bp)

>U35_46085 306 Hv_44K_v2
TGGCTGTAACCATTCTCCAAAGATGATAATTTGACCATCACTTATACATCCAAAGTGCCC
AAGTACACAGCACCGGCTGATGTCTATGGCTCAGCTCGGTCGATGGGGACAACTGCACAG
GTCAACCTGAACTACAACCTTACATGGGGGGGGGCGGTTGATGCGGGGTTCAGCTACCTC
CTAAGGTTCCATTTCTGTGAGATTCAGTATCCCATCACCAAGATCAATCAGAGGTCCTTC
TTCATCTACATCAACAACCAGACAGCACAGGAGCAAATGGATGGCATCGTCTGGAGCGGC
GGGATC

Homology of Contig U35_46085 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None