barSeed - Barley Seed Development Database

Probe CUST_7545_PI390587928

Source Contig U35_8939

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7545_PI390587928	Hv_44K_v2	TCGTCCGTCTTCCATCTATTCTTCAATAAAGTTCTGAGCAAATGATGTATCCAAATGAAG	560	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.419	1.341	0.992	0.927	0.366	0.360
Raw	3237.417	4729.960	3117.390	4656.460	634.826	688.119

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_73062.1	1972	7e-23	1909 - 1968	98	59 / 60	plus	ABC20568
JLOC1	JLOC1_48623.2	2359	4e-23	2198 - 2257	98	59 / 60	plus
JLOC1	JLOC1_48623.1	1952	4e-23	1791 - 1850	98	59 / 60	plus
Harvest21	ABC20568	649	3e-25	561 - 620	100	60 / 60	plus	ABC20568
Harvest35	U35_8939	649	3e-25	561 - 620	100	60 / 60	plus

Contig Sequence (649 bp)

>U35_8939 649 Hv_44K_v2
ACAGGAAAGGCTATAGAGGTTTTCAGAAGGAAGTTCAGAAATGCTTGAGAAATGCACATT
ACCTTAAAGATCGGCTCAAGGATGCTGGAATTAGTGCGATGCTTAACGAGCTCAGCAGTA
CAGTAGTTTTTGAGAGGCCAAAGGACGAGGAGTTTGTGCGACGGTGGCAGCTTGCTTGTG
AGGGAAGTATATCACATGTTGTGGTAATGCCCAGTGTCACTGTCGATAAGCTGGATACTT
TCTTAAATGAGTTGGTGGAGAAGCGAGTAACCTGGTACCAGGAAGGAAAATGCCAATCTC
CTTGCATTGCAGCTGATGTTGGCCAGGAGAATTGTCTTTGTACTCTGCACAAGAAATAAG
TTTGTCAGGGGACACTCTGTGAGTTCAAATGTTGGATACTTGAGTATTTACATTGGTTGG
TGTCGTATTTACCACCTCCCAATCGTGCATCCTTTATTGTTCATTGTTGTCATGGACTCA
TTTAATGTTAGTCCTCGCTTTATATCTATACGAGACAGATCTTAGCACAGTAGCATGCTG
AACTCTATGTGTTGTATTCATCGTCCGTCTTCCATCTATTCTTCAATAAAGTTCTGAGCA
AATGATGTATCCAAATGAAGTTACTGGTATCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_8939 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g33710.1	483	2e-69	protein\|decarboxylase, putative, expressed
Brachypodium v1_2	Bradi5g09817.1	470	8e-72
Arabidopsis v10	AT1G43710.1	482	7e-59	\| Symbols: emb1075 \| Pyridoxal phosphate (PLP)-dependent transferases superfamily protein \| chr1:16486534-16488298 REVERSE LENGTH=482