barSeed - Barley Seed Development Database

Probe CUST_7542_PI390587928

Source Contig U35_8940

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7542_PI390587928	Hv_44K_v2	AGAAACATTTGGTACTGTAATGTAAGAGATTGCGAGCTTGATCTCTCAATCATGGCTCTG	654	GeneList: darkmagenta MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	13.413	7.110	1.704	0.604	0.320	0.285
Raw	279.144	247.560	51.031	30.197	3.515	3.984

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11957.1	997	2e-24	722 - 781	100	60 / 60	plus	None
JLOC1	JLOC1_7980.1	862	8e-25	649 - 708	100	60 / 60	plus
Harvest21	ABC18483	687	3e-25	628 - 687	100	60 / 60	plus
Harvest35	U35_8940	714	3e-25	655 - 714	100	60 / 60	plus

Contig Sequence (714 bp)

>U35_8940 714 Hv_44K_v2
CCCCGGGCTTTTGGGGTNCGGCACGAGGACAATTTTCTTCCCCCTCGCTACCCTGTCTTC
CTCCTCAAATCTTCCTCTCTAGCTGATTCAAACTCACATTTGTGAGAGATATCCAGTGGT
AGAGGCCAGGGAGGGGAGCACAGCACGATGGCCCGGGCATTTCTGGCCTCCGCTGCTGCA
GCGGCCGGCTGCGGGACGCAGGCGCAGCAGACGCCGTGGCTCCTTCTGCTGCTGGGGGCG
GTGGCCATATCGGTGACCGTCCTCCTCTGCGGCAAAAGCTCCGAGAAGAAGAAGAAGGCC
AGCAGGGCACCGCGGGCGGCGGCGACCACTGCAACTTCGTTGTCGACCACATTAGCCGAC
GGCAATACAGCCCTCTTTCTTGCTGCGGCGGCTGTAGCTTCATCTAACGGAGGCGGTGGT
GCTTGTTTTGGCGGTGGCGGAGGAGGCTGCGGAGGGGGCTGTGGCGGTTGCTAGCTACAG
GAGTAGCATGCGTCAGCTGGCGTGCAGCTGCAGCGCAGGAAGGCATGGCATTAGCCGGAG
CCGGAGTTCTGAGCTGCTACGGGACTCTCTATAGTACGGATCCCTCCCTGCAGCTACTAC
GTACTTAGTAGTCGATCACAAGATTTGGGGCTATTAGCTTGATGATGTATTGCAAGAAAC
ATTTGGTACTGTAATGTAAGAGATTGCGAGCTTGATCTCTCAATCATGGCTCTG

Homology of Contig U35_8940 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None