barSeed - Barley Seed Development Database

Probe CUST_7539_PI390587928

Source Contig U35_8942

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7539_PI390587928	Hv_44K_v2	TGAAGTTGTCTCCAGAACTGTTATGTTTTCTAGGGTAGACCAGAACAATATTAAACATCT	951	GeneList: thistle2 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.532	1.357	2.865	2.080	0.811	0.741
Raw	409.437	1683.140	3013.993	3413.735	469.047	474.584

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357559	2758	2e-24	2669 - 2728	100	60 / 60	plus	ABC17489
MLOC	MLOC_37184.1	1690	2e-24	1381 - 1440	100	60 / 60	plus	ABC17489
JLOC1	JLOC1_24043.1	1604	8e-25	1431 - 1490	100	60 / 60	plus
Harvest21	ABC17489	1126	3e-25	952 - 1011	100	60 / 60	plus	ABC17489
Harvest35	U35_8942	1126	3e-25	952 - 1011	100	60 / 60	plus

Contig Sequence (1126 bp)

>U35_8942 1126 Hv_44K_v2
GCCAAGCTTTGCTCGGTCGATGCTTTTCTGAAGACGATACTGGATGTACCATTTGCATTC
AAGAGAGTGGATGCTATGCTCTATGTTTCTAACTTTTATCTGGAGGTCAATCAGCTGAGA
ATGTCCTACACTACTCTCGAGGCAGCCTGCCAGGAGCTGAGGAGCAGCAGGCTATTCCAC
AAGGTTCTTGGGGCGGTCCTCAACTTTGGCAACATGATGAGCATCAACACAGGCTCTCCA
AATTCAAATGCACTGGAGCCCAACACGCTCCTGAAGATAGTCGACGTCAAAGGTGCCGAC
GGCAAGGCGGCGCTCCTACAGTTTGTCGTCCAGGAAATCATGAAGCCTGAAGGACACAAC
AATCTGAACCCGACATGCAAGACGAACGCGAGCACGAGTCCGCCGTACGACGTCGACTGC
AGGAAGCACGGCCTCCAGGTCGTCTCCAAGCTCGCCGCCGAGCTGACCAGCACCAAGAAG
GCCGCGTCGGTTGACATGACGGGCCTCAGCCGGAGCGTGTCGGAGCTCGGGGTCGGCCTC
GGGAAGGTCCACGACGTGCTGAGGCTGAACGGCATGATGGCCTCGGCCGAGAGTGCCCGG
CGGTTCCATAATGCGATGAGCGCGTTCCTGCGGCAGGCCGAGGAGGAGATCGTCAGGCTC
CAGGGCCAGGAGAGCGTGTGCCTGTCGTCGGTGAGGGAGATGGCCGAGTACTTCCACGGT
GGTGACTCGGCCGGCGATGAGGAGGCTCGCTTGTTTAGGGTCTTTGCTGGCGTCAGGGAG
TTCGTGGCAATGCTCGACCGGATCTGCAGAGAGGCCGGGGAGGTCCAGGGCGTCGGTTCG
ACGCCGGTGAGCTGGGTGGCTGCTGGCTCGCCCATGGGGGCGACGCCTTGAGCCGGTGAT
GGTTCTGTCTGGAAATTGTTATGAGCATCTGTTTTGGTAGAACATATGGTATGAAGTTGT
CTCCAGAACTGTTATGTTTTCTAGGGTAGACCAGAACAATATTAAACATCTATCTATATA
TATAGTGCAGTAGTATGTTGTATAAAGAACATTGGTAAGTTTATCCATCACATGTAAGGT
TATTATCTAGAATGGAACTTGAAATGACTAAAAAAAAAAAAAAAAA

Homology of Contig U35_8942 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g01350.1	831	2e-138	protein\|retrotransposon protein, putative, unclassified, expressed
Brachypodium v1_2	Bradi2g39860.1	793	6e-150
Arabidopsis v10	AT3G25500.1	1051	3e-78	\| Symbols: AFH1, FH1, AHF1, ATFH1 \| formin homology 1 \| chr3:9251320-9254826 REVERSE LENGTH=1051