barSeed - Barley Seed Development Database

Probe CUST_7534_PI390587928

Source Contig U35_8944

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7534_PI390587928	Hv_44K_v2	ACACCAGAGTTTCCGCTGTGTATTCAATACAGGAAGTACTGGATTTGATACCCCAAAAAA	934	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.620	1.258	1.241	0.744	0.200	0.216
Raw	203.216	236.134	220.828	215.145	19.732	23.197

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_7750.1	1131	3e-22	1045 - 1100	100	56 / 56	plus	ABC17023
JLOC1	JLOC1_5117.1	1167	1e-22	76 - 131	100	56 / 56	minus
Harvest21	ABC17023	1005	3e-25	935 - 994	100	60 / 60	plus	ABC17023
Harvest35	U35_8944	1005	3e-25	935 - 994	100	60 / 60	plus

Contig Sequence (1005 bp)

>U35_8944 1005 Hv_44K_v2
ATGTGCAGCCAACCCCAGCTAGATGCCCCGAGCTCCTGCTTGCTCTTAGCGCAAGCCGCC
GCTCGCGCAAGCTGCATTCTCCACCAGGAGCAGCGACTCCCGCAGCCGCGCCTGAGCTCC
TCGAGCTCCCGCGCGCGAGAAACCACAGCAGCCCCATCTCCTCGCGTTGCCCTGCCGGCC
GTCGCGAGATCCGGTGCCCCACCAACGGATCTCCCCATCACCGTCCAAGGAGCTTCTCCA
TCCGCGCCATGGACGACCGTCGAAGCTTCTCAGCTAAGCCATGGAGCTCGTCGCCTCGTG
CCCGTTCTGCACAGCTCGCCCCTGCAGGTCCACTGTGCTCCATCCCCATGTCCACCGTGA
CTGGCCACGAGCAGAACCGATGGATCAGCAGGTCCCCTGCGTTGTGCTCGTTTTGCCTCT
CTCCTGACCATTTTTTCCCTCCTCTGATCTCTGCTCTCTCTTGTTGCGTGCGAACCAGCA
CCACCCATGGAGTTGCTCCCTCTGCCCCGAGTTTTTGCCACTTTGAGCCGGTGCGCAACA
GGGCCGTTGATGTCGCCGCCCCGTGGCCATGGAGCCAAGCTCCGCCCCGCCATGGCCACT
GCTTGGAGCACCTGCCTTCCGCCGCCAATGCCCGCGCCCTTGCATCCAGCTCCATGCCTC
CGTCGAGTCCGTCCCTCTGCTTCCTCTATTCGTCGCAGAAGAGCAGAGCAGCTCGCACGT
TGTGCGTTGACCGAGCCAAGACCAGCCCCCCGAAGCCAGCTTTTTAGGTCGTGGTGAGCA
CCCGCTCCATATTTTGTTTTTGACTGCTATCATCTGCTCTATATCACAAGAGTTAGTTAG
CAGTCTAGTTGGTTAGCACAGCAGTCCTGCTTTGTGTAGGTCGCGGGATCAAATCCCCAC
CACTACACTNTTTCTTCTGCAATTTTGTTCACACACACCAGAGTTTCCGCTGTGTATTCA
ATACAGGAAGTACTGGATTTGATACCCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_8944 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None