barSeed - Barley Seed Development Database

Probe CUST_7531_PI390587928

Source Contig U35_8947

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7531_PI390587928	Hv_44K_v2	TTGTGCATTTGCGATTCTGGACATCTGATAGGAAATAAGAAGGTTGCATTGATTCGTTTT	564	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_17680.1	4715	2e-24	4513 - 4572	100	60 / 60	plus	ABC20819
JLOC1	JLOC1_12210.1	4270	8e-25	4003 - 4062	100	60 / 60	plus
Harvest21	ABC20819	641	3e-25	565 - 624	100	60 / 60	plus	ABC20819
Harvest35	U35_8947	661	3e-25	565 - 624	100	60 / 60	plus

Contig Sequence (661 bp)

>U35_8947 661 Hv_44K_v2
GCCTGAGTTTGCGAGCACCAGCAAGCCATGCCCGTCTCTAAGAGCGACGTGTACGCCTTT
GGTGTCATCCTGCTTGAGCTTCTAACAGGGAGGATCGCGGGCGAGATCATTTGTGTGAGC
GACGGCGCGGTCGACCTGACGGACTGGGTGAGGATGCTGGCAAGGGAGGAGCGTGCTTCG
GAGTGCTTCGACAGCCGCATTGTTGAAACTGAAAACTCAGGGGCCGCATCCAACAAGCTG
GAGGACATGCTGCACATTGCCATCCGGTGTATCCGGTCTGCATCGGAGAGGCCGGAGATA
AGAACGGTGTTTGAGGACCTCTCTTCGCTTTCGTCGTTGTCGTGACGGTGACTGGGAGTG
GCGTACATCTCGTACTTACATCAGGTTCTTGAGACTCCGGAGAGCCGGGTATACTAACAG
GGTGTTAGGGTTTTGTGGCTATGTCTCATGTGTGTAGTCTCTTTTGAGCATTTCATTGGT
GGGGTTCCTCTTCCTGGGAAGCGTTCATACATTTTTTGGTTAGTTTACAATTCTAGCATT
AGATGACTTGTGTGAGAATGTGTTTTGTGCATTTGCGATTCTGGACATCTGATAGGAAAT
AAGAAGGTTGCATTGATTCGTTTTAAAAAAAAAAAAAAAACCCCCAAAAAAAAAAAAAAA
A

Homology of Contig U35_8947 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None