barSeed - Barley Seed Development Database

Probe CUST_7525_PI390587928

Source Contig U35_46099

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7525_PI390587928	Hv_44K_v2	GGTACATGTACAGGGGTTAACCTGATTATATGTTGGTGAATAGACAATGAAAAATGAAGT	29	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_12452.1	2067	6e-24	1 - 59	100	59 / 59	minus	ABC45698
MLOC	MLOC_12452.2	2113	3e-22	1 - 56	100	56 / 56	minus	ABC45698
JLOC1	JLOC1_8355.2	2127	8e-25	2057 - 2116	100	60 / 60	plus
JLOC1	JLOC1_8355.1	2086	8e-25	2016 - 2075	100	60 / 60	plus
Harvest21	ABC45698	611	3e-25	30 - 89	100	60 / 60	minus	ABC45698
Harvest35	U35_46099	611	3e-25	30 - 89	100	60 / 60	minus

Contig Sequence (611 bp)

>U35_46099 611 Hv_44K_v2
TTTTTTTTTTTTTTTTTGAAAACTAAAGAACTTCATTTTTCATTGTCTATTCACCAACAT
ATAATCAGGTTAACCCCTGTACATGTACCCATCAGCCACCATCGGGACAAGTGTGTCATG
CGCTGCAATGTAATTCAAATATATACAAACTCCTATGGAACCCTGCCACAATCTCAGTGA
AAATTAGGCCTCATGGCGGAGCTACAGTGTGCCAATCTGCACTAGGAAGGGAGGTGCCAG
CTCTAAAATCCACAGAAGTCCTTGAGCTCATTGTGCACGTCCTCGTTCCTGAGCTTCGAC
ATGGCCGACTTCTCGATCTTCCTGATCCACTCCTTGGACACGTGGTAAATGCCCCCGATC
TGCTCCAAGGACCGGCACCTCCCATCCTCGAGGGCGTGCCGCAGCTTCAGCACGCGCCCT
TCCCTTGCCGGAAGCCTGTCCAGAACAAAGAGAAGCCTCTCCCTCAGCTGCCTCCGGAAG
ATGGCCTCCTCGGGGTCTTCTAGTGATGTGTCTGGGGTCACGTCCACAAACTTGGCGTTC
TGTCCGGCTCCAACTTCCATATAGAGTGAAACGACACGACGGGAGCATTTCCGTGCCAAT
CTAACATTGGC

Homology of Contig U35_46099 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g51150.3	441	2e-68	protein\|RNA polymerase sigma factor, putative, expressed
Brachypodium v1_2	Bradi2g14567.1	546	2e-67
Arabidopsis v10	None