barSeed - Barley Seed Development Database

Probe CUST_7508_PI390587928

Source Contig U35_8968

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7508_PI390587928	Hv_44K_v2	ATACCCTGACGGATTAGCCTTTGGCATCAGTCTGGGATGCTGCTTGCTTATTATGCTAAA	655	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62210.1	3315	2e-23	69 - 126	100	58 / 58	minus	ABC23204
JLOC1	JLOC1_40692.2	3308	1e-23	3196 - 3253	100	58 / 58	plus
JLOC1	JLOC1_40692.1	2574	1e-23	2462 - 2519	100	58 / 58	plus
Harvest21	ABC23204	679	3e-25	15 - 74	100	60 / 60	minus	ABC23204
Harvest35	U35_8968	729	3e-25	656 - 715	100	60 / 60	plus

Contig Sequence (729 bp)

>U35_8968 729 Hv_44K_v2
CTCAATTCCAGAAACACCACAGCCAGCAGTACATGCAACTCCAGATGTCAGAGGAAAGTT
TATAAGAATGGAGTTTGGCAGCAGCAGCAGCAGCAGGTTCTCAAGCCCTCCAGCGCTGTC
CATGCGGAAGTCGAGGAACAATATCTTGTCTCCACAGCAGAAGTTGAGGTTGCAGTCAGG
CTCTGGAAATGCCAGCAAGCTATGCTTCAGTATCCAGAAAAGAGTAGCTCTTGGTTCACC
TGCTCCAGCAAGAAGAACTTCCGTGGTGTCTGGTACTGGCATATTTAATCGAAGTCTGCG
TGAGCAAATGATGGCAGGGAGATTTGGCAATGCGCAGCAGGTGTTCAACTCCAAGAGGAG
GATGTCTGTCCTCTAAGCGGGCGTGCTTGGGAGGTGAAGAAGATCAGGTTGGAATGTTGA
AACAGGGGTGCAGAACCAGTTTACTTTTGCTTCCTCAGGGAAGGTGGTACTTTTGCTTCC
TCAGGGAAGGTGGTACCATGGCTGGGACTGCGAGCTTGTGTTGATAAGAGAACTTGTGTT
GATAAGAGAACTTGTGTTGGGGTTCTCTGGGCTATGATAAATATCTACTTTCAGGGCTGC
GTATAATTAACCAGACTACCTTTATTTTCATGAAAAAATGGGATCTAGCAGGCACATACC
CTGACGGATTAGCCTTTGGCATCAGTCTGGGATGCTGCTTGCTTATTATGCTAAAAAAAA
AAAAAAAAA

Homology of Contig U35_8968 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None