barSeed - Barley Seed Development Database

Probe CUST_7507_PI390587928

Source Contig U35_8969

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7507_PI390587928	Hv_44K_v2	GCTCATGTATTAATAACCAGTTTGGTACTAGTATCAATAAAGAAGTTAGCCTCATGTTGC	304	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_49687.1	470	2e-24	327 - 386	100	60 / 60	plus	ABC18451
JLOC1	JLOC1_31782.1	373	2e-21	320 - 373	100	54 / 54	plus
Harvest21	ABC18451	395	3e-25	32 - 91	100	60 / 60	minus	ABC18451
Harvest35	U35_8969	395	3e-25	305 - 364	100	60 / 60	plus

Contig Sequence (395 bp)

>U35_8969 395 Hv_44K_v2
GCGTACTCCACGCACGGGTCGGTGCTCGACCAGGCGGTGTTCGTCCGGGAGGAGGACATG
GAGGACGTGGAGAGGCCCGCCGCCGTCGACATGGCCAACGCCAACGCAGACGTCAACGGC
AGCATCAAGAACTTCTAGTGTCGGTTTCAGTTTCAGGCGATCTGTCGGTCCTCTGTACTT
TCAGGTTCAGTAAGCTAAGTTTAGTGCTGGCGCCACTGCCTCCGTAGTGGTGCACTCTAG
AAGAGAATAAGCCCCCAATCCGTCTCTGTAGGGTAGTGTTTCACTGGTGCAGTTAATCAG
TAATGCTCATGTATTAATAACCAGTTTGGTACTAGTATCAATAAAGAAGTTAGCCTCATG
TTGCTCTTAAAAAAAAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_8969 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None