barSeed - Barley Seed Development Database

Probe CUST_7502_PI390587928

Source Contig U35_8974

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7502_PI390587928	Hv_44K_v2	TGCAACAACACATTTGACAATAGTTCTAAAAGGTTTTGGGCTGCCAGCTCCGAGGCTCAT	570	GeneList: thistle2 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.193	0.883	2.661	1.797	0.889	0.846
Raw	4.331	42.604	104.784	111.890	19.285	19.393

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362549	2252	7e-23	2178 - 2237	98	59 / 60	plus	None
MLOC	MLOC_5582.1	3291	7e-23	1505 - 1564	98	59 / 60	minus	None
JLOC1	JLOC1_3598.1	1890	4e-23	185 - 244	98	59 / 60	minus
Harvest35	U35_8974	678	3e-25	571 - 630	100	60 / 60	plus

Contig Sequence (678 bp)

>U35_8974 678 Hv_44K_v2
GTACAGCTTCGGCGTGCTGGTGCTCGTCATCCTCTCCGGCCGGCGGCCGCTCCACATCCT
CTCGTCGCCGATGAAGCTGGAGAAAGCCAACCTGGTGAGCTGGTGCCGGCAGCTCGCGCG
CGCCGGCAACGTGCTCGACCTCATCGACGAGCGGCTGGAGGGCGCCTACGACAAGGACCA
GGCCACGCTCTGCGTGCAGCTCGCGCTCATGTGCCTGCAGCGGCAGCCGGAGCACCGCCC
GGACAGCACGGACATTGTCAAGATCCTCGCCGGCGAGATGGAGCTGCCGCCGGCGCCCGT
GGAGTTCTCGCCGTCGCCCCAACTCCGGCGGCCGTTCCCGCGGTCATCGCACCGGGCGCA
GCCGGACGCCACCGGGTGAGGATGGTAACTGATCTACTCGCTGCGAGATCATACTTGCGT
TCTTGCAAGAGATTTTTGTTACAGATTTGGGGTGTTGACTTCATTGTTCTTCAACGTACA
TAATCTAGGGGTTATTCATTTCTAGCTTAATTGATTTCGTAACAAGATAGTATTAATCTT
TGTAGCAATTTGATCTTGCTTCTTGAAAGATGCAACAACACATTTGACAATAGTTCTAAA
AGGTTTTGGGCTGCCAGCTCCGAGGCTCATGCCAGACATTGTGCTAGTGATTTGCATTGG
GTAAAGCGGCCGCTCGAG

Homology of Contig U35_8974 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g17320.1	636	1e-65	protein\|protein kinase family protein, putative, expressed
Brachypodium v1_2	Bradi3g19560.1	646	1e-67
Arabidopsis v10	None