barSeed - Barley Seed Development Database

Probe CUST_7493_PI390587928

Source Contig U35_8983

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7493_PI390587928	Hv_44K_v2	GGCGAACTGCAGTGAAAAGATGGATAAATTTCTGAAGAGATGCTTCTATCAGTCCGGACA	550	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_16742.6	2225	2e-24	592 - 651	100	60 / 60	plus	ABC24228
MLOC	MLOC_16742.7	2563	2e-24	759 - 818	100	60 / 60	plus	ABC24228
MLOC	MLOC_16742.10	1366	2e-24	569 - 628	100	60 / 60	plus	None
MLOC	MLOC_16742.3	1570	2e-24	772 - 831	100	60 / 60	plus	None
MLOC	MLOC_16742.1	877	2e-24	682 - 741	100	60 / 60	plus	None
MLOC	MLOC_16742.8	2381	2e-24	749 - 808	100	60 / 60	plus	ABC24228
MLOC	MLOC_16742.4	1432	2e-24	689 - 748	100	60 / 60	plus	None
MLOC	MLOC_16742.2	897	2e-24	689 - 748	100	60 / 60	plus	None
MLOC	MLOC_16742.9	1640	2e-24	572 - 631	100	60 / 60	plus	None
MLOC	MLOC_16742.5	2039	2e-24	682 - 741	100	60 / 60	plus	ABC24228
JLOC1	JLOC1_11556.2	2243	8e-25	577 - 636	100	60 / 60	plus
JLOC1	JLOC1_11556.1	2192	8e-25	586 - 645	100	60 / 60	plus
Harvest21	ABC20768	610	3e-25	551 - 610	100	60 / 60	plus
Harvest35	U35_8983	610	3e-25	551 - 610	100	60 / 60	plus

Contig Sequence (610 bp)

>U35_8983 610 Hv_44K_v2
ATCGAAGCCCCATTCGTCAGAGCCAAGCATCCAAATCATTTTCTCCACATCAGATTCAGA
TGGATTGATAGTTTGATACTCTCAACTATTCTTGTTTCCTTCTTGACCCAATGGCCGCCA
TCGACTTACGCTTCCATCTCCATCCTGCCGCCTTCTCCTCTGTCCACCCGTCCAATCCAA
GCACCAAACCGCACCGCCATTGCCCACCTCAGAGGATCCATGCTGCAGGAAGAAGGTGCC
TTCTCACGGCGAAGTCCTCAAATGGGCACCCGCAGATCGGGGCCTCCTTCAACGATGGGG
TGCTAGATGCTAAGCCGTCTGGAGCTGGAGGCCCGGCGACGGAGCAGGGAGGGAACACCG
TCAGCATCACAGTCGTCGGAGCCTCCGGTGATCTTGCCAAGAAGAAGATCTTCCCGGCGC
TCTTCGCCTTGTTCTACGAGGACTGGCTCCCCGAGCATTTTACAGTCTTTGGTTATGCTC
GTAGCAAAATGAGCGATGAAGAGCTCAGGAACATGATTAGCATGACCCTAACCTGTCGGA
TTGATCAGAGGGCGAACTGCAGTGAAAAGATGGATAAATTTCTGAAGAGATGCTTCTATC
AGTCCGGACA

Homology of Contig U35_8983 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g29950.1	578	1e-71	protein\|glucose-6-phosphate 1-dehydrogenase, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi1g60050.1	571	1e-89
Arabidopsis v10	None