barSeed - Barley Seed Development Database

Probe CUST_7492_PI390587928

Source Contig U35_8984

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7492_PI390587928	Hv_44K_v2	ACAAACATGGAACAACTACTATCAAAGATAACATCAGTGCAGTCAAGAAGCGACACAGTG	432	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367045	2593	2e-24	500 - 559	100	60 / 60	plus	ABC21269
MLOC	MLOC_11396.1	596	2e-24	258 - 317	100	60 / 60	minus	None
JLOC1	JLOC1_7544.1	590	8e-25	274 - 333	100	60 / 60	plus
Harvest35	U35_8984	492	3e-25	433 - 492	100	60 / 60	plus

Contig Sequence (492 bp)

>U35_8984 492 Hv_44K_v2
ACAACCCCCGATCTCCCCGGCGTCCAACCTCCTCCCCAACCTCGGCGCGAAATGGCCACC
ACCGTCGGCGCCGCGCCGACGGCAATGGACGAGAAGGCCCGGCGCACGCGCGATCTCCTG
GCCAGTTTCTACAACACCGACCCCGCGGCCGCCGGCGCGGTCGCCGCGTCCCCGGCGCGG
CCCTCCCCCGCCGCCGCCACCGCGTCGCCGCTCGAGTCCATCAACTCCACCTCCTTCAAC
CCCGATGTCTACATGGACGTCCTGGTGCAACAATCAAATCTGGAAGCCCTTCTACAGAGG
CATGTGAAGATGGCTGCTGAAATCAAGAACCTGGACACAGACTTACAGATGCTAGTATAT
GAGAATTATAACAAATTTATAAGTGCAACTGACACTATAAAAAGGATGAAGACTAACATT
GCTGGCATGGAGACAAACATGGAACAACTACTATCAAAGATAACATCAGTGCAGTCAAGA
AGCGACACAGTG

Homology of Contig U35_8984 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g52770.1	771	4e-60	protein\|expressed protein
Brachypodium v1_2	Bradi1g09340.1	767	2e-65
Arabidopsis v10	None