barSeed - Barley Seed Development Database

Probe CUST_7491_PI390587928

Source Contig U35_8985

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7491_PI390587928	Hv_44K_v2	AACATTGGTTAAGCCATCAGTTACTACAAATGAAATCGACAGGGCGGTGCATCATATGAT	638	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62143.4	1710	2e-24	1000 - 1059	100	60 / 60	minus	ABC19853
MLOC	MLOC_62143.2	2316	2e-24	1606 - 1665	100	60 / 60	minus	ABC19853
MLOC	MLOC_62143.3	1946	2e-24	1126 - 1185	100	60 / 60	minus	ABC19853
MLOC	MLOC_62143.1	1858	2e-24	1138 - 1197	100	60 / 60	minus	ABC19853
JLOC1	JLOC1_40645.2	1883	8e-25	688 - 747	100	60 / 60	plus
JLOC1	JLOC1_40645.1	1847	8e-25	656 - 715	100	60 / 60	plus
Harvest21	ABC20104	698	3e-25	639 - 698	100	60 / 60	plus
Harvest35	U35_8985	698	3e-25	639 - 698	100	60 / 60	plus

Contig Sequence (698 bp)

>U35_8985 698 Hv_44K_v2
ATAGCCGAAAGCCGAAACCTCCCGGTGCCGGCGGCGTCTCATCCTCAACGCACATCCCCT
CTCTCTGCTGCACTCCTCTTCCCTTGTACCCGCCGGTCTCCTCTTCCTCGAACACGGCCG
CCCAGGCTCCGTGTCCTCGACCACGACACCTCCACCGACGCCGTGCGAATCCCCATGGCC
ATGTCACCTGGAGCGTCGTGTTCCGGCGTTCCTGTACCACCCCGGCCGGCCGGAACCCAC
ACATTCCTCCTGCCGTCGGCTCCCCCGTTCGTCTCAAAGTGCACCATCAATCGAAGAGAT
CCTCGGACGCCCTCTTCTTGTTTGGGTAAAGCAATAACGCCAAAGCGCTGCTTTGTCGTG
GCTGGCGGACTTACTTGGGTTGATGGGGTTGAAGAAGAGCTGATGGAGCTACAAAAGACA
CAAGAGGAAAGCTCAGTGAAGTTAAAGAAGAGGCCGCCTTTGAGGCGTGGAAAGGTCTAT
CCCCAACTTCCTGTACCAGAACACATTCCAAGACCTTCTTATGTGGGTGCAAACATACCG
CAAGAACTACCCGCAGTGCGCCGAATACACAACGCAGAAGGTATCACTGGGATGAGAGCT
GCTTGCAAACTTGCTGCCCGTGTACTGGACTTTGCGGGAACATTGGTTAAGCCATCAGTT
ACTACAAATGAAATCGACAGGGCGGTGCATCATATGAT

Homology of Contig U35_8985 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g26520.5	278	6e-85
Arabidopsis v10	None