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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_7489_PI390587928Hv_44K_v2AGATCAAACTGTAAGAGTGACCACACATAGCCCACATGTGCTGCTCCCTTGAAAGTTTAG10GeneList: purple
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.2540.5330.9731.3981.0711.311
Raw 57.185187.932301.490670.708181.239241.806



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK36429321122e-241992 - 205110060 / 60plus None
MLOCMLOC_13141.638652e-243749 - 380810060 / 60plus None
MLOCMLOC_13141.739782e-243862 - 392110060 / 60plus None
MLOCMLOC_13141.316192e-241511 - 157010060 / 60plus None
JLOC1JLOC1_8864.115858e-251378 - 143710060 / 60plus
Harvest21ABC252045933e-2511 - 7010060 / 60minus
Harvest35U35_89878043e-2511 - 7010060 / 60minus



Contig Sequence (804 bp)

>U35_8987 804 Hv_44K_v2
ATGGCTGTCCCTAAACTTTCAAGGGAGCAGCACATGTGGGCTATGTGTGGTCACTCTTAC
AGTTTGATCTACACAGCGGATGAATATGCCTAGGCACCAAAAATGTGGAGGTTTTATAAT
GAATATGTGCATGTTTGCGCTCACACAAAGAGAAAGAAAAAAAAAACACGCAAATGTCAG
TAGGTTTTCAGCGACTTCCATTATGAACAAGCAGGCCGATCTGTACCACCTGCCGATCCT
CACAATTTTCCAGTGAAGTTAGCTCGTAGTATGATACTGTAGTTCAGGTGGCTATTCAGT
CAACAATGAGAATCGGGCATTAAACCTCCACGCGAGATGGATTAAGCTCACGCAGATTGC
TTGTGTGTTTGTCCGTATGTCTCTGTGGAAAACCTCCATGAGTATTATTTCAACAGGCAG
CCATCAATGGTCTAAAGGCATCAACAATCCATGTGGCAGTTAAAATGTTGCCATATTCCA
AAATTATGTATCTTCATCCAGAAACCCATCCTCATCTTCCAGGTCATCTAGAATAATGTA
TTTGGCATCCCCACTAAATGAAGGTGAATCGAGTCCATCCTCATTTATCTGACCCTTCTT
GAATTTCTCATACTTGTACCAGTTGAATAAGCTAACACCAACCATAATAGTGGTAAGACC
AACCCCTTTCAACCAAGTAAATTCATCATGGAAATAAAATACTGCGACCAAGATGGTTAC
AGCTTCCTTTACTACCCCAGCTATTGTCACAGTTATAGCACTTGTTGCTGAAACAAGTAT
ATACTCCGTTAACACGGACGCGTG



Homology of Contig U35_8987 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None