barSeed - Barley Seed Development Database

Probe CUST_7483_PI390587928

Source Contig U35_5000

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7483_PI390587928	Hv_44K_v2	TACCATGGTAAATATGGTATGCTGCAATACGAAACCCTGGTGAAATAAGTACCCTTTTAG	1338	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.343	1.340	1.101	0.873	0.288	0.360
Raw	245.216	371.441	276.076	340.000	41.035	54.276

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70060.1	6661	2e-24	5131 - 5190	100	60 / 60	minus	ABC17120
MLOC	MLOC_70060.2	4455	2e-24	2551 - 2610	100	60 / 60	minus	ABC17120
MLOC	MLOC_70060.5	3115	2e-24	1112 - 1171	100	60 / 60	minus	ABC17120
JLOC1	JLOC1_46469.2	3357	8e-25	1485 - 1544	100	60 / 60	plus
JLOC1	JLOC1_46469.1	3343	8e-25	1471 - 1530	100	60 / 60	plus
JLOC1	JLOC1_46468.3	2897	8e-25	2374 - 2433	100	60 / 60	minus
JLOC1	JLOC1_46468.2	2902	8e-25	2379 - 2438	100	60 / 60	minus
JLOC1	JLOC1_46468.1	2893	8e-25	2370 - 2429	100	60 / 60	minus
Harvest21	ABC17120	694	3e-25	606 - 665	100	60 / 60	plus	ABC17120
Harvest35	U35_5000	1427	3e-25	1339 - 1398	100	60 / 60	plus

Contig Sequence (1427 bp)

>U35_5000 1427 Hv_44K_v2
GAGCACAGCCACTAATAGGATCCGCGAAGGAGAAGCTTTCACAATTTTGTCATGTACCGG
TTGAGAACATACTTAACATCCATGATGTTCCAAATATATGGCATGTTCCCCTTATTCTTA
GGAACCAAAAGGCTCATGAAGCTATAATCAAACAACTAAACCTTTCGAGGTCTGCTGGCC
CCCCTGAATTACGAGATTGGACGCTGATGGCCGAGTCATATGATAACCTCAGTACCTCTG
TTAAAATTGCTTTGGTTGGGAAGTACACTAATCTGTCAGATTCTTACTTATCAGTGGTGA
AGGCTCTCCTACATGCCAGTGTTGCATGTTCACAGAAACCTTCTATCCAGTGGGTTTCAG
CTTCAGATCTTGAAGATGCGGCTGCAGCAAGTGCACCAGATGCTCATGCTAAAGCTTGGG
AAACTCTTAAGGGTTCCTCATGCATTTTGATACCTGGAGGATTTGGAGATCGTGGAATAT
CTGGTATGATATTGGCGGCAAAATATGCTCGTGAGAATAAAGTACCATATCTTGGCATAT
GTTTGGGAATGCAGATATCGGTGATTGAGATGTCCAGACATGTTTTGGGTCTGGGAAATG
CAGACAGTGAAGAGTTCAAAACAGACACACCAGATCGTGTTGTTATGTACATGCCTGAGG
TATCAAAAACACACATGGGGAACACGATGAGGTTGGGTTGCCGTCGAACGTTCTTCCGCA
AACCAGATTGTCTGACATCGAAACTGTATGGAAATCCTCCACATGTAGATGAGCGCCATC
GTCACAGATACGAGGTCAATCCTAGCTTTGTTCCAATGCTTGAGAATGCAGGACTTCAGT
TTGTTGGTTGTGATGAAAGTGGAAACAGGATGGAGATTGTAGAGCTACAAGATCACCCGT
TCTACATAGGCGTTCAATTCCATCCAGAATTCAAGTCTAGGCCTCGAAAACCGTCACCTC
CATTTACAGGTCTGATACTGGCAGCGACTGAACGCATGCGAACACTTACAAATGTCCCCA
ATGGTGGCGCTGGAGCTTCTGAGTAGTGTCGTTGCACACCGTCAGATGGATATCACCCTA
TGTGTGTGCAGTTCAAGAATCTGCTTGTGGCCGAAGCAGTTTCCATCATGTAGTCATGTA
CCAGAAATGTACCTAAGCTAAGAGATATGTTCTGTTTTCCGTGGGGAGTGGCTTAACCGA
TCATCATACAGTGGGGTCGTAATTTAGTTGGCTAATTGAGATGGCAATGCTAAGGCACTT
GTCGACTTCATTTGAGGTACAACCTGTGTATCAGTCTGAGATGATCATGCAAAGTTCTTT
GACCTGCCCCCTCTTTATTACCATGGTAAATATGGTATGCTGCAATACGAAACCCTGGTG
AAATAAGTACCCTTTTAGAAATAAAAAAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_5000 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g36950.3	517	0.0	protein\|CTP synthase, putative, expressed
Brachypodium v1_2	Bradi4g04870.1	579	0.0
Arabidopsis v10	AT4G02120.1	556	1e-148	CTP synthase family protein \| chr4:940873-944097 FORWARD LENGTH=556