barSeed - Barley Seed Development Database

Probe CUST_7481_PI390587928

Source Contig U35_8993

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7481_PI390587928	Hv_44K_v2	TGTGTGCCTGCAGCTCTGATCTGCGGTACTTATGATATACTAGTACAATTTATAAGCAAA	522	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_52639.1	2718	6e-24	2640 - 2698	100	59 / 59	plus	ABC49960
MLOC	MLOC_52639.4	2595	6e-24	1482 - 1540	100	59 / 59	plus	ABC17091 ABC39570 ABC49960
MLOC	MLOC_52639.2	3512	6e-24	2406 - 2464	100	59 / 59	plus	ABC17091 ABC39570 ABC49960
JLOC1	JLOC1_33750.1	1745	3e-24	890 - 948	100	59 / 59	minus
JLOC1	JLOC1_33749.2	2834	3e-24	2285 - 2343	100	59 / 59	plus
JLOC1	JLOC1_33749.1	2829	3e-24	2280 - 2338	100	59 / 59	plus
Harvest21	ABC49960	269	1e-24	10 - 68	100	59 / 59	minus	ABC49960
Harvest35	U35_8993	596	3e-25	523 - 582	100	60 / 60	plus

Contig Sequence (596 bp)

>U35_8993 596 Hv_44K_v2
GGGCATCATCCCGTTCGACTCCCGGTTCCGATACCTCTTCCTGCCTGACATGGGATCATT
GAACTGAGTGTCGAATCATCAGGTCAGAGGTGCAAGGAAGCCCTATATCGTCGGTGCCGA
ACCGAGCTGTTTCGGCGTGTGCTCGACCAGGTCTCGGATCACACAGGTGCACATCCAGTG
ACCATCGGGTCTGCTACGACACTGAACCAGTGCGCAACGGCCGGCTGGATTAAAAGACCG
GTGTCCTCCTCCGATGTCAGATAAATCTTGAGCACGTCAGCTGGATTAATTGGCTAGTTT
GCCTCGACTTCTTGTCGAATTCAGCGCAAAATGTTGTACTCCCTCTGTACCATAATACTT
GTTGTTGGAGAGAACTAGTCTAGTTTTCCCCAACAACAAGTATTTAGGAACGGAGGGAGT
ATATGATAGTGGTTGATGTCTAACTAGCTAGCAAATAAAATGAAGGCGATCGTTATGAAG
GTGTTGTATGTCTACTGACGACATGTATGTGGCAAAATGTATTGTGTGCCTGCAGCTCTG
ATCTGCGGTACTTATGATATACTAGTACAATTTATAAGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_8993 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None