barSeed - Barley Seed Development Database

Probe CUST_747_PI390587928

Source Contig U35_21768

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_747_PI390587928	Hv_44K_v2	GAAATCAGCAGGAAAGAGAACATGCTTTGAGATCCTTCAAGAGTGGTCAAACTCCAATTC	992	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_37340.1	2901	2e-24	2015 - 2074	100	60 / 60	plus	ABC19026
MLOC	MLOC_37340.2	2269	2e-24	2183 - 2242	100	60 / 60	plus	None
MLOC	MLOC_37340.3	2142	2e-24	1116 - 1175	100	60 / 60	plus	ABC19026
JLOC1	JLOC1_24174.3	2353	8e-25	1288 - 1347	100	60 / 60	plus
JLOC1	JLOC1_24174.2	3073	8e-25	2008 - 2067	100	60 / 60	plus
JLOC1	JLOC1_24174.1	2188	8e-25	1123 - 1182	100	60 / 60	plus
Harvest21	ABC15709	613	3e-25	525 - 584	100	60 / 60	plus
Harvest35	U35_21768	1081	3e-25	993 - 1052	100	60 / 60	plus

Contig Sequence (1081 bp)

>U35_21768 1081 Hv_44K_v2
GGCGGAGCCTGTGCCCTTCGACGAGCACCAGAACACGGGGATCAACTTTGAAGCGTACGA
AGACATCCCCGTAGAGACCAGCGGCCGGGAAGTTCCGCCCGCCGTGGGCACGTTCGCGGA
GATCGACCTCGGCGCCGCGCTCAACGACAACATTCGCCGGTGCAAGTACGTGCGGCCCAC
GCCCGTGCAGCGCCATGCCATCCCGATCTCTCTGGCTGGGCGAGATCTCATGGCTTGCGC
GCAGACTGGATCGGGGAAAACGGCCGCCTTCTGCTTCCCCATCATCAGCGGCATCATGCG
GGGCCCGCCCGTGCAGCGGTCACAACGGGGCGGGAGTAGGACCGCCTGCCCGCTTGCCCT
CATCCTGTCGCCCACAAGAGAGCTGTCAATGCAGATTCATGAAGAGGCCAGAAAATTTTC
ATATCAGACTGGTGTCAGGGTAGTGGTTGCATATGGCGGGGCGCCTATTACCCAGCAGTT
GAGAGATCTTGAGAGGGGTGTTGACATTCTTGTGGCTACCCCTGGTCGTTTGGTTGATTT
ACTGGAAAGGGCAAGAGTATCCTTACAGTCGATTAGATACCTTGCCCTTGATGAGGCAGA
TAGAATGCTGGATATGGGGTTTGAGCCGCAAGTTCGGAGAATTGTTGAGCAAATGGATAT
GCCTCCACGAGGTGTCAGGCAGACGTTATTGTTTAGCGCCACGTTCCCGGGAGAAATCCA
GAAAATGGCATCTGACTTTCTGGAGAACTACATATTCCTGGCTGTTGGAAGGGTCGGGTC
AAGTACTGAGTTGATTGCCCAGAGAGTTGAGTTTGTACAGGAGGCAGATAAAAGAAGTCA
CTTGATGGATCTGCTCCATGCGCAAAGAGACAGTTCTGATCAAGGGAAGCAAGCTCTCAC
ACTTGTCTTCGTGGAGACCAAAAGGGGTGCCGACTCACTGGAAAACTGGTTGTGTACGAA
TGGATTTCCAGCGACTTCTATTCATGGTGATAGAAATCAGCAGGAAAGAGAACATGCTTT
GAGATCCTTCAAGAGTGGTCAAACTCCAATTCTTGNTGCAACTGATGTGGCGGCCCGGGG
C

Homology of Contig U35_21768 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os11g38670.1	624	protein\|DEAD-box ATP-dependent RNA helicase, putative, expressed
Brachypodium v1_2	Bradi4g14490.1	610
Arabidopsis v10	AT2G42520.1	633	P-loop containing nucleoside triphosphate hydrolases superfamily protein \| chr2:17705382-17708744 FORWARD LENGTH=633