barSeed - Barley Seed Development Database

Probe CUST_7474_PI390587928

Source Contig U35_23990

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7474_PI390587928	Hv_44K_v2	ATGGGTTTAGCAGTACGAGCAATTTTATTTGGAGTACCTTATACGCAGTATGAATTTGAT	532	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.536	1.677	1.338	0.843	0.315	0.305
Raw	739.657	1325.513	887.848	880.459	115.783	122.181

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355444	3269	2e-24	3190 - 3249	100	60 / 60	plus	ABC20716
MLOC	MLOC_60080.3	2678	2e-24	1866 - 1925	100	60 / 60	minus	ABC20716
MLOC	MLOC_60079.2	3816	2e-24	3004 - 3063	100	60 / 60	minus	ABC20716
MLOC	MLOC_60080.2	2063	2e-24	1250 - 1309	100	60 / 60	minus	ABC20716
JLOC1	JLOC1_39148.2	1070	8e-25	755 - 814	100	60 / 60	plus
Harvest21	ABC20716	642	3e-25	533 - 592	100	60 / 60	plus	ABC20716
Harvest35	U35_23990	642	3e-25	533 - 592	100	60 / 60	plus

Contig Sequence (642 bp)

>U35_23990 642 Hv_44K_v2
ATCAAGCGCAGCAGCCTAGGTATGGTGCTCGTCAGCCATCATTTGGTGCCCCTGAAGCAC
CACAGTCTAGTTTGGGCTCTGCTCAGAGTCTCCCACACTATGGCCGCGTAGGAAATGAGC
ATGATCAGCTTGGATCTTCTCGTAAAGGCGGACCAACATTTAGCACTCAGCCACTGCAGA
CTGCTGAGGCCCCAGACGACATGGCTGTCAAATACAACCAGCATTACTAGTTTTCTTCCA
ACATTGGGCTCCAAAACAAATATACCCTAAGTTAATGCGAAGGAAAGTGCCAAAAAAAAT
CTTATCTTTGTTAACAACAAGCTGCTGCATGGATGGAACGGTCTATTAGTGGATTGAAAA
CAGCCGGAAGTGGGCGATTAAAATGGGTCGGGTTCTAGTAACTTTCAGACTTGTTGGCTG
TTATTATTTGCACATTTGACCATCATTGGTCAATAATAGGATTGTAATAATTGGGCTTGA
GAATTTGCATCCACGATGAGTTGGATCATCATATCCACCTGGACAGTTAGTGATGGGTTT
AGCAGTACGAGCAATTTTATTTGGAGTACCTTATACGCAGTATGAATTTGATATGATATT
GTTTTATCACAGAGATGTCAACTGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_23990 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None