barSeed - Barley Seed Development Database

Probe CUST_7463_PI390587928

Source Contig U35_20004

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7463_PI390587928	Hv_44K_v2	GTCCTACAATATTTTTTGTAACTTTGATTTATGGTACCGGCCCATATTTTGTTGTGAGCT	999	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.740	1.570	1.088	0.726	0.282	0.303
Raw	580.562	812.151	497.868	526.089	72.171	83.642

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_3181.1	1264	6e-21	1075 - 1133	97	58 / 60	plus
Harvest35	U35_20004	1076	3e-25	1000 - 1059	100	60 / 60	plus

Contig Sequence (1076 bp)

>U35_20004 1076 Hv_44K_v2
AGACCATGGCTGTTGCCACTCTATCTGACGTCGCTCAAGAAATGGGTGCTACAATTTCTG
CTAATGTTGACTAGATAATGCCTTTGGCATTGAAAGAACTTGCATCTTCTGAGGCTACAA
ATAGGAGAAATGCCGCTTTCTGTGTTGGCGAGCTGTGCAAGAACAGCGGTGCTGCAGCAC
TAAAATATTACCCGGATATACTGCAGGGTCTGCATCGTCTGTTTGCTAATTCCGAACCAG
ACCTTGCAGTTAGAGATAATGCGGCCGGTGCTATTGCTAGAATGATAATGGTGCAACCTC
AGTCAATTCCTCTCAACCAGGTTCTTCCAGTGTTTATCAAAGCTTTGCCACTAAAAGAAG
ATCACGAAGAATCAATGGCTGTCTATAGTTGCTTATGTAATTTGTTACTATCATCACATC
CCCAGATCCTTACTCTAGTGCCTGATGTGATAAATGTCTTTGCCCAAGTGGTAGTATCCC
CAGATGAGAGTGATGAAGTCAAAACAACTATTGGCAAGGCTGTTTCTCATTTGATATCTG
TTTATGGTCAGCAGATGCAGCCAATACTAAGTACTCTACCACCAGCTCATGCGAATGCAT
TGGCGGCATTTGCCAGTAGAAGATGATCTTCAGGGAAACAATTACCTTTGATTTTTTTTG
CTGCCCAAGTGTTTTCTTAAGATTGCCCTCCGAGGAAAGGTTTTTTGGATATTGCTCGAG
TCACCTAAGTTTTGTGATATTAGTGCCATTTGCTGAAGAATATTGGTTAGCTGGATGTTG
TTTGATCAGCTAAACCTCCTTTTCGAGTTATGATAGTGATATTGCATTGGAATGTTGTCT
ACTGTGGTTGAAGGTGCAGTACTTTGGCTGGCGGCAGCTTGGTTGAGTCTAGTGTGTATT
CAGGTTCCGTTTTTGGCTACTTCATTATGTGTTTCAGTTTTTTAATTCTTTGCCGGGGTG
TGCAAATCATTGATGTACTGTTGTACATATAAGCATGTTGTCCTACAATATTTTTTGTAA
CTTTGATTTATGGTACCGGCCCATATTTTGTTGTGAGCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_20004 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g15540.1	327	1e-111	protein\|HEAT repeat family protein, putative, expressed
Brachypodium v1_2	Bradi1g67430.1	1047	3e-109
Arabidopsis v10	AT4G27640.1	1048	1e-78	ARM repeat superfamily protein \| chr4:13798013-13802976 REVERSE LENGTH=1048