- Probe CUST_7460_PI390587928
- Source Contig U35_23998
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_7460_PI390587928 | Hv_44K_v2 | AACTTCCAGGTCAAGGACCAGATCGGCAGCTTCTTCTACTTCCCGCCGCTCTCAATGCAG | 426 | GeneList: turquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.285 | 1.404 | 1.575 | 0.706 | 0.286 | 0.328 |
| Raw | 67.664 | 104.018 | 108.982 | 73.595 | 11.479 | 14.004 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK375045 | 2061 | 2e-24 | 456 - 515 | 100 | 60 / 60 | plus | ABC21006 ABC22470 |
| MLOC | MLOC_53084.1 | 2425 | 2e-24 | 564 - 623 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_34070.3 | 2925 | 8e-25 | 292 - 351 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_34070.2 | 3153 | 8e-25 | 313 - 372 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_34070.1 | 3205 | 8e-25 | 572 - 631 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC21058 | 561 | 3e-25 | 427 - 486 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_23998 | 563 | 3e-25 | 427 - 486 | 100 | 60 / 60 | plus |
Contig Sequence (563 bp)
>U35_23998 563 Hv_44K_v2 CAGCTCCCACCAGCCCCTCTCTCTCTCTCTCTGTGTGTGCGTGGACTCCACTCCACTCCG CCGGACCGGAGAGAGCGAGAAGCGGAAATGGCGTGCCCGCCGGCGGCGCTGCTGCTCCTG CCGCTCCTGCTCCTGGCGCCGGCGCCGGCGCGGGCGACCGACCCCTACGCCTTCTTCGAC TGGGACGTCTCCTACATCACCAGATCCCCGCTCGGAGTCCCGCAGAAGGTGATCGCAGTC AACAAGGAGTTCCCGGGCCCCGTCGTCAACGTCACCACAAACTACAACGTCGCCGTCAAC GTCCTCAACAGCCTCGACGAGCCGCTCCTAATCACCTGGGACGGCATCCAGCAGCGGAAG AACTGCTGGCAGGACGGGGTCCTCGGCACCAACTGTCCCATCCCGCCCGGATGGAACTGG ACCTTCAACTTCCAGGTCAAGGACCAGATCGGCAGCTTCTTCTACTTCCCGCCGCTCTCA ATGCAGCGGGCAGCCGGCGGCTTCGGGGGCATCACCGTCAACAACCGCGCCGTCATCTCA GTCCCCTTTGACACCCCCGACGG
Homology of Contig U35_23998 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os06g01490.1 | 594 | 8e-77 | protein|monocopper oxidase, putative, expressed |
| Brachypodium v1_2 | Bradi1g52200.1 | 593 | 5e-78 | |
| Arabidopsis v10 | AT5G48450.1 | 621 | 3e-59 | | Symbols: sks3 | SKU5 similar 3 | chr5:19632791-19635612 REVERSE LENGTH=621 |