barSeed - Barley Seed Development Database

Probe CUST_7456_PI390587928

Source Contig U35_20008

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7456_PI390587928	Hv_44K_v2	CCAAGTCCAGAACCATTAGCTAGAAGAAGAGAAGGGGATCCATCGAACGACGCGAGGAGA	8	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_71397.1	976	2e-24	805 - 864	100	60 / 60	minus	ABC43918
JLOC1	JLOC1_47452.1	1106	8e-25	114 - 173	100	60 / 60	plus
Harvest21	ABC12157	569	3e-25	9 - 68	100	60 / 60	plus
Harvest35	U35_20008	569	3e-25	9 - 68	100	60 / 60	plus

Contig Sequence (569 bp)

>U35_20008 569 Hv_44K_v2
GCACGTCGCCAAGTCCAGAACCATTAGCTAGAAGAAGAGAAGGGGATCCATCGAACGACG
CGAGGAGAGCGGTGGCAATGGCGTCGCTTCTGTCGCCCAACACCGTCGCTGCGACCACGG
CGAGGCCGACCGGCAGGAGGGGCCGCCTTGCTCCCAGTGTCACCGCCATGGCAACCAAGG
GCCCGAAGCCCAGCTCCGGCGGCACGAAAAGATCGTCGGGCACTACCACGGTGTTCCCGG
TGGGGAAGCCCGCGGGCCCGCCGCGGCCGGCGACGACGAAGGGGTCAGCGCCCGTGAAGC
TGCTGACGAACGTGGAGAAGCTGCGGCTGCTGACCAAGGCGGAGAAGGCAGGCCTTCTGT
CCGCGGCGGAGCGTGCCGGGCTGTCGCTGTCGGCGGTGGAGCGGCTCGGACTGCTGTCCA
AGGCGGAGGAGCTCGGGGTGTTGTCGGCCGCCACCGACCCCGGCACCCCCGGCTCGCTGC
AGGGCCTCGCGCTCCTGCTGCTGGCCGCCGGCCCCGCCGTCGTCTTCCTCGTCCCTGAGC
AGTACCCCTGGGAGGTGGCGCTCCAGGCC

Homology of Contig U35_20008 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None