barSeed - Barley Seed Development Database

Probe CUST_7444_PI390587928

Source Contig U35_20011

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7444_PI390587928	Hv_44K_v2	CCCTTGTGCACTGCTGTACCAGTATCTCGTTAAACATAAGTAAGTTTGTAAAATCAATAA	1438	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.335	1.306	1.043	0.915	0.417	0.415
Raw	4313.100	6218.390	4576.383	6115.787	1009.176	1086.725

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363819	1573	7e-23	1496 - 1555	98	59 / 60	plus	ABC12374 ABC37482
MLOC	MLOC_7783.1	2188	7e-23	2091 - 2150	98	59 / 60	plus	ABC12374 ABC37482
JLOC1	JLOC1_5136.1	1402	4e-23	1112 - 1171	98	59 / 60	plus
Harvest21	ABC12374	1037	3e-25	976 - 1035	100	60 / 60	plus	ABC12374
Harvest35	U35_20011	1500	3e-25	1439 - 1498	100	60 / 60	plus

Contig Sequence (1500 bp)

>U35_20011 1500 Hv_44K_v2
CCTCGCCTCGCCTCGACCTCAACGCCCGCGGAATCGGAGGAGCGCGCGACGATGTCGACC
ACGGCGGTGGTGCAGGCCGGCGACGCGCCGGACCCGACGGTGCGGAACCTCCTGGAGCAG
GACACCCTCAAGTGGGTCTTCGTCGGCGGCAAGGGCGGCGTCGGCAAGACCACCTGCAGC
TCCATCGTCTCCATCCTCCTCGCCTCCGTCCGCCAGTCCGTGCTCGTCATCTCCACCGAC
CCCGCCCACAACCTCAGCGACGCCTTCCAGCAGCGCTTCACCAAGTTCCCCACCCTCGTC
AAGGGCTTCTCCAACCTCTACGCCATGGAAATTGATCCCAAGGTAGAAAATGATGATTTT
GGCAATGAAGGAATGGAAGGATTTATTTCAGAATTGACAAATGCAATTCCAGGAGTCGAT
GAAGCTATGAGTTTTGCTGAAATGCTGAAGTAATTATAGCCTCCAATTAGTTCAAACAAT
GGATTACTCCGTTGTAGTTTTTGATACTGCTCCTACAGGGCATACTTTACGGTTGCTGCA
GTTTCCAGCAACACTGGAGAAGGGCCTAACAGAAAATGATGGATTTAAAGAATAGATTCT
GTGGACTGATAAAACATGCCAGTCCACTTTTCGGTCTCGGTGATGATTTGAACGAGGATA
TGATGCTTGGGAGAATTGAAGGCATGAAGGACGTGATCGAGCAAGTGAACAGGCAGTTTA
AAGATCCAGACTTGACAACCTTTGTTTGTGTTTGTATTCCTGAATTTCTTTCATTGTATG
AAACGGAGAGATTGGTGCAAGAGTTAGCGAAATTCGAGATTGATGCACACAATATTATAA
TCAATCAAGTTATTTTTGACGAGGAAGCTGTTGAGTCGAAACTGCTAAAAGCGCGGGTAA
AGATGCAACAAAAGTATGTCGATCAGTTCCATATGTTATACGACGACTTCAACATCACCA
AGTTGCCCTTGCTCCCAGAGGAGGTATGTGGTGTTCAAGCTCTACAAAACTTCTCCAAGC
ACTTCCTGGCACCATACACGGCGTCGCTGAAAAGGGGCAGCGTGGAGGAGCTAGAAGAGC
GAGTGGCTACACTGAAATCAGGACTGCAAGTGGCCGAGTCGGAACTAGATAGAGTTAGGA
AAGGAAAGCAGGTAGCATGAGCCATTTTCGCCTGTCAGAAGCTCTTGCACTCTGCAGACA
CTGGCTATAGAGATTTTCCTCGTTCCTGCATTCTCCGGTCGATTTCCTCCATTTCCTGTT
TCCCCAGTTGAAAATTTTAGATTTGTTGTTATAGTCATCAGAAGAGAAGTGTACTGTAAG
GCACGCGATATATATAGGTCTCTTTTTTTTTTGCCCTTCTGTTAGGGTTATGATTGGAAT
TGATTATAGGTTGCTTAGGAGCTGTTGTGGGCTGAGATTGGAATTGATTACCTAGAATCC
CTTGTGCACTGCTGTACCAGTATCTCGTTAAACATAAGTAAGTTTGTAAAATCAATAAAG

Homology of Contig U35_20011 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g34970.1	362	9e-165	protein\|arsenical pump-driving ATPase, putative, expressed
Brachypodium v1_2	Bradi4g35540.1	364	2e-172
Arabidopsis v10	AT1G01910.1	353	4e-134	P-loop containing nucleoside triphosphate hydrolases superfamily protein \| chr1:313595-315831 REVERSE LENGTH=353