barSeed - Barley Seed Development Database

Probe CUST_7440_PI390587928

Source Contig U35_20015

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7440_PI390587928	Hv_44K_v2	CGATGTTTTGTACCATTGACTTATCACACTCGGATCAGTTGTCTTGTACATTAGTTAATT	935	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK372018	3328	2e-24	3182 - 3241	100	60 / 60	plus	ABC12884
MLOC	MLOC_14006.2	3006	2e-24	843 - 902	100	60 / 60	minus	ABC12884
MLOC	MLOC_14006.1	4419	2e-24	1097 - 1156	100	60 / 60	minus	ABC12884
JLOC1	JLOC1_9535.1	3108	8e-25	2185 - 2244	100	60 / 60	plus
JLOC1	JLOC1_9534.1	1556	8e-25	1110 - 1169	100	60 / 60	minus
Harvest21	ABC12884	1059	3e-25	65 - 124	100	60 / 60	minus	ABC12884
Harvest35	U35_20015	1071	3e-25	936 - 995	100	60 / 60	plus

Contig Sequence (1071 bp)

>U35_20015 1071 Hv_44K_v2
GATTCTCTGCAAGGTTCGAAGGAGTTCTGCACGGAAATAGAGCTGTTATCCAGATTGCAT
CACCGGAATCTGGTTTCGTTAGTTGGCTATTGTGATGAAGCAGATGAACAGATGCTAGTT
TATGAATACATGCCAAATGGCACTTTACGGGATCATCTTTCTTCCAAGGCCAAACAATCT
CCCAGTTTCGGTTTGAGGCTTCACATAGCATTGGGTGCCTCCAAGGGAATTCTGTATCTA
CACACTGATGCAAACCCTCCTATATTTCACCGTGATGTGAAGGCCAGTAACATTCTTTTG
GACTCGAAATTTGTTCCAAAGGTGGCTGACTTTGGCCTTTCGAGGCTTGCTCCAGTGCCG
GATATTGAAGGGACATTAGCAGGTCATGTTTCCACTGTTGTTAAGGGCACACCGGGATAT
CTTGATCCAGAATACTTCCTGACTCATAAATTGACGGATAAAAGTGATGTGTACAGCCTT
GGCGTTGTGTTTCTTGAAATGTTGACCGGGATGAAGCCAATTGAGCATGGGAAAAACATA
GTGAGAGAGGTAAACAAAGCGTACCAATCAGGGAACATTTCTGAAATCGTCGACAGCAGG
ATGGGCATGTGTCCTCCAGACTGCATCAGTAGGTTCCTCCTGCTAGCAACCAAGTGCTGC
CGGGATGAGACCGATGAGAGGCCTTCCATGTCGGAGATTGTCCGAGAACTCGAGGTCATC
TTGAGGATGATGCCAGAGATGGATCTTAATCTGCTGGATACTACGGACACAGACTCAGCT
GATATGAGTAAATCTCTGTCAATTTCTTCAGCAACTGGGACTTCGTTTGTCACACAGACC
TCTGGCAGTGTTAATGCAAGCAGTGGCGTGCTCTCTGAGGTGCTGGCTCCTCGCTGATCT
TGGCATTTTCATAGGATTTTAACTTGTAAATGCTACGATGTTTTGTACCATTGACTTATC
ACACTCGGATCAGTTGTCTTGTACATTAGTTAATTATTAGTCAACTTTGATGTAAACTAG
AGAATATGAATGAGAACAGCTGAGGAATATTAACAAAAAAAAAAAAAAAAA

Homology of Contig U35_20015 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g40270.7	846	2e-147	protein\|expressed protein
Brachypodium v1_2	Bradi2g22140.1	947	3e-179
Arabidopsis v10	AT1G06840.1	953	3e-123	Leucine-rich repeat protein kinase family protein \| chr1:2097854-2103208 REVERSE LENGTH=953