barSeed - Barley Seed Development Database

Probe CUST_7439_PI390587928

Source Contig U35_20016

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7439_PI390587928	Hv_44K_v2	AGAATGGTTTTTGAGTTGACTTGCCAGTAACTTTTACGAGTTACAGGGAGTTGGACCGGG	761	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364480	1572	2e-24	776 - 835	100	60 / 60	plus	ABC16577 ABC45189
MLOC	MLOC_778.1	1483	2e-24	961 - 1020	100	60 / 60	minus	ABC16577 ABC45189
MLOC	MLOC_778.2	1216	2e-24	695 - 754	100	60 / 60	minus	ABC16577 ABC45189
Harvest35	U35_20016	854	3e-25	762 - 821	100	60 / 60	plus

Contig Sequence (854 bp)

>U35_20016 854 Hv_44K_v2
ACGCACCGTCGCCGCTTTCGGACTCGGAGCGCGCGCGCACGCGTCCGTCGGGCATCCACA
CCGCCCCGCCCCCGCGACCGACCCGACCCAACCCTAGCCGCAATCCCCGCCCGTCCCGTC
CTCCGCGCCCGCCGATGCAGACGGAGGCGCGGGTGGGCGGCGTGGCCCTCGACGGCCGCG
GCGCCGTGGCGGCCTCCCGCCGCCAGGAGCAGCAGCAGCAGCGCCACATCGGCACCGCCG
CGCACCTCGCCGCCGGCGGCTTCGCCGGCGTCGTCAGCAAGACCTGCACCGCGCCCCTCG
CCCGCCTCACCATCCTCTTCCAGGTGGCAGGTATGCATTCAGATGCTGCAGCTCTAAGGA
AGTGTAGTATATGGCACGAGGCTTCGCGGATTGTTCGAGAAGAAGGGTTCAGGGCATTTT
GGAAAGGCAATCTTGTCACCATTGTACATCGATTACCTTATTCCGCCATGAGCTTCTATT
CATATGAACGATACAAAAAGCTTCTCGGAATGGTGCCTGGCCTGGATGACCCAAATTATG
TTAGTGTTGTACGTTTGCTTGGTGGTGGTCTAGCGGGAGTGACAGCTGCATCTGTAACTT
ACCCGTTGGATGTTGTTCGAACTCGTTTGGCAACTCAGAAAACCACCAGGTATTACAAGG
GCATCTTTCATACGTTGTCCACAATTTGTAAAGAAGAGAGTGGCAGAGGATTGTATAAAG
GCCTTGGGGCCACATTATTGGTAAGCCGCATGCTTCTACTGAGAATGGTTTTTGAGTTGA
CTTGCCAGTAACTTTTACGAGTTACAGGGAGTTGGACCGGGTATAGCAATCAGCTTTTAT
GTATATGAATCCTT

Homology of Contig U35_20016 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g04990.1	323	1e-88	protein\|mitochondrial carrier protein, putative, expressed
Brachypodium v1_2	Bradi2g02880.1	329	8e-94
Arabidopsis v10	AT3G55640.1	332	7e-62	Mitochondrial substrate carrier family protein \| chr3:20640048-20642411 FORWARD LENGTH=332