barSeed - Barley Seed Development Database

Probe CUST_7438_PI390587928

Source Contig U35_20017

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7438_PI390587928	Hv_44K_v2	CAACTGCACCATTATGTTTTCATGGAAGCAGCAAATGTGACTACAAAGATAGAAATAACA	692	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364480	1572	2e-24	1486 - 1545	100	60 / 60	plus	ABC16577 ABC45189
Harvest35	U35_20017	766	3e-25	693 - 752	100	60 / 60	plus

Contig Sequence (766 bp)

>U35_20017 766 Hv_44K_v2
GTATAAAGGCCTTGGGGCCACATTATTGGGAGTTGGACCGGGTATAGCAATCAGCTTTTA
TGTATATGAATCCTTGAGGTCTCATTGGCAAATGGAAAGACCGAATGATTCCAATGCTGT
CGTGAGCTTGTTTTCTGGGAGTCTATCTGGTATTGCAGCGTCGACAGCTACATTTCCTCT
TGATCTTGTAAAGCGACGTATGCAACTACACGGTGCGGCTGGGACATCGCAAATCGAAAA
ATCAAGCATAATTGGGACCATCCGCCAAATCCTTCAAAAGGAAGGTCCTCGTGGCTTCTA
CCGAGGCATAGTCCCCGAGTACCTGAAGGTTGTTCCTAGCGTTGGAATCGCCTTCATGAC
CTACGAGGTATTGAAGAGCATGCTCTCCAGCATTGATGGGGATGATGAGAACTAAGGTTG
CAAACCGGTTGCGTTACCTTTTTTTGCCGCCCTAGGTTACTACTGTAAGACCACAGTGTA
TGAGAGTGATTACAACATGCCTTTGCCAGGCAGTTTTGTAGGTTGGTAGGATAAAGCAAG
CTTTACCTGAGGTTATGTTGTACCATAGGCTAACTATAAAGAGCAAACGATTGAATCCGT
TTTCCTGTGAGCGTTATGCTCTGATCCGTCGTGGAATGTAATGCCATTTGCAAGGAGAAG
ACTCCAAAGGTTTAATGGATTATGTGTAATTTCAACTGCACCATTATGTTTTCATGGAAG
CAGCAAATGTGACTACAAAGATAGAAATAACAAAAAAAAAAAAAAA

Homology of Contig U35_20017 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g04990.1	323	1e-74	protein\|mitochondrial carrier protein, putative, expressed
Brachypodium v1_2	Bradi2g02880.1	329	4e-79
Arabidopsis v10	AT3G53940.1	365	4e-52	Mitochondrial substrate carrier family protein \| chr3:19971258-19973564 REVERSE LENGTH=365