barSeed - Barley Seed Development Database

Probe CUST_7436_PI390587928

Source Contig U35_20019

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7436_PI390587928	Hv_44K_v2	GGGCAGCATTTCCTGAAGAACCTGAATCAAGCAACGTCAGTTCAAATATTAAATCTGGGT	1161	GeneList: darkgrey MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.391	0.655	1.348	1.966	0.935	0.979
Raw	8.568	19.353	40.385	93.367	15.454	17.804

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360844	1759	2e-24	965 - 1024	100	60 / 60	plus	ABC17510
MLOC	AK369830	2987	2e-24	1756 - 1815	100	60 / 60	plus	ABC17510
MLOC	MLOC_15952.2	872	2e-24	432 - 491	100	60 / 60	minus	ABC17510
MLOC	MLOC_15952.3	648	2e-24	374 - 433	100	60 / 60	minus	ABC17510
MLOC	MLOC_15952.1	995	2e-24	451 - 510	100	60 / 60	minus	ABC17510
JLOC1	JLOC1_10968.3	1220	8e-25	731 - 790	100	60 / 60	plus
JLOC1	JLOC1_10968.2	869	8e-25	380 - 439	100	60 / 60	plus
JLOC1	JLOC1_10968.1	942	8e-25	453 - 512	100	60 / 60	plus
Harvest21	ABC12874	1224	3e-25	1162 - 1221	100	60 / 60	plus
Harvest35	U35_20019	1224	3e-25	1162 - 1221	100	60 / 60	plus

Contig Sequence (1224 bp)

>U35_20019 1224 Hv_44K_v2
GGACCCGAAGAAGGAAGTTGGCGGAATCTAAACCGCCGGCCGAAGACACCATCAGCAACC
TCCCCGACGCCGTCCTCGGCGAGATTATCTCGCTCCTCCCCACCAAGGACGGCGCCCGCA
CCCAGGACGGCGCCCGCACCCAGATCCTCGCGTCCCGGTGGCGCCACCTGTGGCGCTCCG
CCCCTCTCAACCTCGACTGCCGCGGCCTCAAGCACGGGGATGAACTCGCTGGTGCCTTGT
CACGCATCGTTTCTTCCCACCAAGGCCCCTGCCGCCGCCTCTGCATCCACGGTGGTGGAT
GGGGCGTCAAGGAGGTCGGCGTTCCTCCGCTGGCGGGGCATCGGGTCCTTCCTACCCAAG
CCGCTTGCGTGGTTCGCGGGGGTAAGGAAATACCCGGCCGGGGAAACTGACGGTTGCTTC
CCACGCGCGTCCCCTCCTGATCCCCTTCTCCCCCCGTCGCGATGGCGGCGCCGCCTTCCA
CCTCCTCGCCGTCCGGGGAGGTCCCCGTGGAGAGATCGCCGACTGACCTGACCGGCGGCG
ACGGCCAGGCAGCGCCCTCGAGGGCCGAATTGCTTAGCATGGTGAAGAAGCATTCACATT
TGATCGGGTGGACTGTCGTCGAGGCCGAGGACGATCCATCGGACGTCGAGATGGACGATA
AGTTCTGGCATGAGATGCTTGATCTTTTCTTCGTGCGTGGTAGGGTGTCAAGGAGCAGGG
AAGAGGACGACCTCGTCTTCTTTGTCAATAGCTCGATGCAGAAAATGGAAGATCTGCCTC
CCTTTTTCGTGCGCAGATGGGCTCCTACGCTTGAAAAGCTCATCAATGCTAATTCAACTG
AGGTTGATTGGGAACGTTCGTTCTATTTGAATTTAGTCGCTCACACGTCATATACCGTCA
CAGTGGCATTGTGCAGTATCAGCAATCTTCGCAATCGTGCAGACAAAAGCAAGCGGTTGC
CTCCAATTTATAAGGTTTCGAAAACTGTATATGCATCCCCTAGCCGTGTTAATTTCCGCC
TTGATCAAAGAAAGGCTGTAGAAACAGTACCTGCATATCCCAACATTTATTTCTCAGTTG
ATGACTTCGATGATCCTTTTGATGCTGTGGTTTTGTCAGACCCAGAACACTGCTATTGTG
TGATTCTCAATGCGCATGATGGGGCAGCATTTCCTGAAGAACCTGAATCAAGCAACGTCA
GTTCAAATATTAAATCTGGGTTCA

Homology of Contig U35_20019 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g14514.3	457	5e-107	protein\|retrotransposon protein, putative, unclassified, expressed
Brachypodium v1_2	Bradi3g21520.6	286	1e-123
Arabidopsis v10	AT1G59520.3	388	1e-72	\| Symbols: CW7 \| CW7 \| chr1:21861589-21866016 FORWARD LENGTH=388