barSeed - Barley Seed Development Database

Probe CUST_7420_PI390587928

Source Contig U35_47968

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7420_PI390587928	Hv_44K_v2	GCAGCAGTGCTGAATAAAATGTTTTCCCCTTCCTGTGTACTAGTAGTTATTATACAAGAA	31	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60591.2	3821	7e-23	22 - 82	98	60 / 61	minus	ABC06105 ABC11912
MLOC	MLOC_60591.1	2918	7e-23	22 - 82	98	60 / 61	minus	ABC06105
JLOC1	JLOC1_39532.2	6129	4e-23	6018 - 6078	98	60 / 61	plus
JLOC1	JLOC1_39532.1	5165	4e-23	5054 - 5114	98	60 / 61	plus
Harvest21	ABC49584	740	3e-25	32 - 91	100	60 / 60	minus
Harvest35	U35_47968	740	3e-25	32 - 91	100	60 / 60	minus

Contig Sequence (740 bp)

>U35_47968 740 Hv_44K_v2
TGAATATATTCGCTTAAATATNCCTATGNNATTCTTGTATAATAACTACTAGTACACAGG
AAGGGGAAAACATTTTATTCAGCACTGCTGCCAACCCAAATTACAAAAAATATTAGAAAA
TGGAATTGGGGAAATATTTGTACAGTTTGGCTACATGCTCAGTCATCTGGATAGGGCAAA
ACTACGTTCTGGAGCGGTACTTGACGAGTGCAAATCATCAAAGCAAATTCAGGAGCATCA
TTGGAGTGTTGGGAGGAAATGAATGTTTGCTACTATATCCTATAATTCTGTCATAATAAC
ATAGTACATCCATAGGAAGGAGGGGGGAAACCATTTTATTCTGCTACCTCAAATTACGAA
AAAAATATTGGAAAGGGGGGGCGGCGGAAAACTTTGTACAGTTTGACAACATGCTCGTTC
ATCTGAATATAGGGCAAAACTCTGCTACCAAGCGCCTAAAAGAGCAAAGTAAGCAATACC
ATCTTCCAACACGTTGCACTGCTTGCAGATCTCAGGAAGTGCAGCAACCTCAGCTGACCG
AAGTGCAGATTGACTGCTGGGAGTAGAGACCGTTTATGGGATTCACGAAATGCTGCTTGC
TTTTTCTGCGCTTTGAAACCACTGTAAATCCCTCTGTATCCTTCTCGCTTTTGGGCGCCT
CGGTGGCCTTCGGTTGTTTGTCGAACTCTTTTGGACTTAAGGCGGTCTTGGTTATGTTGC
TGCTCTGTTCGTTACTAGCT

Homology of Contig U35_47968 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None