barSeed - Barley Seed Development Database

Probe CUST_7412_PI390587928

Source Contig U35_20026

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7412_PI390587928	Hv_44K_v2	TTGTTCGGCTCTTGCTGTACTGAGGTTTAATAAAGGTGCTCCAGTTTTTTGGATAAAAAA	686	GeneList: purple MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.548	0.730	1.124	1.628	0.940	1.214
Raw	357.095	780.360	1013.638	2224.613	464.109	653.955

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368859	1503	3e-21	1450 - 1503	100	54 / 54	plus	ABC13835
JLOC1	JLOC1_39941.1	1760	5e-22	1564 - 1618	100	55 / 55	plus
Harvest21	ABC13835	645	3e-25	571 - 630	100	60 / 60	plus	ABC13835
Harvest35	U35_20026	757	3e-25	687 - 746	100	60 / 60	plus

Contig Sequence (757 bp)

>U35_20026 757 Hv_44K_v2
GGCTTGCAGGCTCATGATCAGCAGTCGAGGAAGACGAGGCGGTGCTGGTCGCCGGAGCTT
CACCGGCACTTTGTTGCCGCCTTGCACCAACTCGGTGGCCCTCAAGTTGCCACTCCAAAG
CAAATCAGGGAGGTGATGAAAGTTGATGGCCTCACCAACGATGAAGTGAAAAGCCACCTC
CAGAAATACCGTCTGCACAACCAGAGGTCCCCTAGCTCTTCCTCAGCTAGCCATCCGATT
ATGCTGGTGGGAGATCTCTGGGCTCATCAGGAGCAAAGCAGCTCGCAGTCCCGGTCCCCT
GAAGGCCCCCTTCAGCTCTCTTGTTCAGGGGTGGCCGTCTCGGCACTCACCGTCAGCGAC
AGTTCTGAGGAAGACGACAGGTCGGTAGGCTATAGCCGGAGATGATCTGAAGGCTTTTGG
GACCGTCAAGAGATTTTCATGAGAGAGAGGTAGAGATAGCTTTGCGGCATGGATGACAAT
AACGGCATACACTCCTGATCGATCGAGAGGGTGTGGTGCAGGCCATGAATCCAGGGATAT
TGGGCGTTGATCCAGCGCCCAAAAAATGAACTGATCATGGCCTTGTTCTTGTGATGTACA
TGAGGCTTTTTTCGCGAGCGTTTCGGGCAGACCACCAATTTTCGCCCCGAGAATTACATA
CATATATATATAATGAGATTCGTATATTGTTCGGCTCTTGCTGTACTGAGGTTTAATAAA
GGTGCTCCAGTTTTTTGGATAAAAAAAAAAAAAAAAA

Homology of Contig U35_20026 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None