barSeed - Barley Seed Development Database

Probe CUST_7410_PI390587928

Source Contig U35_20028

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7410_PI390587928	Hv_44K_v2	CAATATTTTGTTTGTAGGCTAGTACACATTGCAACGCTTAGCCTGAAATAAAGGTTGAAA	2312	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_53255.4	3614	2e-24	3540 - 3599	100	60 / 60	plus	ABC13041
JLOC1	JLOC1_34195.7	4229	8e-25	4117 - 4176	100	60 / 60	plus
JLOC1	JLOC1_34195.5	4583	8e-25	4471 - 4530	100	60 / 60	plus
JLOC1	JLOC1_34195.4	4574	8e-25	4462 - 4521	100	60 / 60	plus
Harvest35	U35_20028	2404	3e-25	2313 - 2372	100	60 / 60	plus

Contig Sequence (2404 bp)

>U35_20028 2404 Hv_44K_v2
GGATGGTGATTTATCCCTAGAACGGTCACTTCATCAAGATCGAACACCATCTAAAATTCC
ATACAGAGAATCAACACCCTCTGCATCATCCATAAGCAGAGGTGGGCATTTTTCAGGCAC
TTCTCCAAATCGTCCACTGCTGCCACCTGTGAGGCACAGAGATGATTCTTCCTTCTTGAG
TTCACATGATGATGACCGCAGACCGCAGAGTGGAGATAGGAGGTTCCATGGCCATCAGAA
GAGGAATGATGTGAATTCTGGACGCGGCCATGGTCATGCCTGGAATAATGCACCGAGCTG
GCCATCTCAAGTTGCAAATGGTTTTGTCCCCATGCAGCATGGTGCTCCTGGGTTTCATCC
ACCTGTACATCAATTTCACCCTCCACCAATGTTTAACCTTAGGCCCCAAATGAAGTTGAA
CCAAACTGGAGTTTCATATCCTATGCATGACACAGTTGACAGGTTTTCGCCCCACATTCG
CCCATTTGGGTGGCCTAATCCGCTGGATGAATCATGCCCCCCTCATCTACAAGTTTGGAA
TGGGGGCAGTGGTATATTTGGTGGTGAACCTTATATGTATGGCAGGCAAGAATGGGATCA
GAACAAGCTGCATGCGGGCAGCAGAGGGTGGGAGGCAACTGGTGATGCATTGAAGGGACA
AAATGAATTGCCTGACACTGAATTTCCTGTTGCTAAAAAGGAGCTTGACTCTTCAGCAAC
TCCTGTTTCAGAGTCTTCAGGTGGACAATGCAATCTTAATCCTTATGAGCAGAAAGAAGC
GAACCATTTGATTTCAGAAAAACATGAAGCAAAGGGTGATGTCATAAGTGCTGTAAAAAG
TTCTGATGCTCCCCGGGGAACAACACTCATGGCCTCCATGTCAAGCAATGGAACTGCAGT
ATTTTCTAGAAACTATTTGTCCAGAGTTAGCGTGTCGCATGATCTTGTTGAGTCGGAGTT
GTACAAAAGGTGCACATCTCTGCTGGGAGGCTTGGGCATAGCAAATGATGGCCCTGATGT
GGTTTGGAATGGGTCTATTGAGAAGAAAGGAAATGCTGGGAAGCTAACTAGAGAACAGGG
AAGCCCCAATCTGTTGGGTTTATTTTATCTGAAGAACAATGATGCAACTTTTCAGAGAGC
CATGGCCCTTCACAAGAATCAGACAGAGAGAGCTGTGGTTCCTACCCAAGCGCAAACTGA
TGGGACAATGGACTTAACACAAGAGAATAGTGACGACACAGAAATGCTTGAGCGTACTCC
ACTGAAGGAATTGTCGGTGAGTAACCCTGTCTTGCACCATCATGCTGGCATTATTGAAGG
GTCACCATTAAAGTCGGTGCCGGGTGATGGCTTGGGGGTGACACCTCCAGCTACTACAGA
ATCTGGTGATGTGGATGCACCTCGAGCAATCACAGAATCTGGTGATGTGGATGCACCTCC
AGTAATCATAGAATCTGGTGACACGGAGATGGTGGCACCTCCTGGAACCACAGGTCCTGA
TGAAGATGATATAGAGGTGGCTGCCTCTCAGTCAATCACAGAACCTGATAAAAATATGGA
GGATGTACCACCGCCTGCAGTTGCCGTACCTTCCGATGGCCCAATCGATGGTGCAACGGG
ATTAATCATAGAACGTACTGATGGCTCGCAGGAGGCCCCTTCAGCCAATGAAGAATCAGG
TGATACTATGGAGGTTGCGCTTCCAGCGTTCACAGAACAATCTGGCCAAGTCAAGGATGA
TTCTCCTTCTGTGGCTACTCCTAACAGTGGAGAGGCTGTGGCCATGCATGCAGCAGTTGA
AAAAGATATTGATGAACTCACTGATGACAGCCGTGGGGATGGTGAAGTGAACGCATCTAA
CTTTGTTTCGGAGTTGGATGTTGTTGCAAATGGCGCTCAGGATTGTGAAGGTTTGTTGGT
GGAGGGTAGGGTAAATTTAAGCCGGATACCTAATTCTCCAGAAAGTACACATTGAAACAC
CTTTTATTTCATTTTTAATTCCTTATTCTCTGAGGGGTTTGTGCCTTCCGCCTGGAGTTA
TTTTGAGTTGCATCAGTTTTTATATACCACCCAGTGTTTTTTTCCGTTAGTGCAGTGTTG
CCGGTGGGCTGGCTTGCTGGTGTGAGCTTAACGTGCCTGTGGGGGATATAGGAGCTGCTG
GCGGGGCATTTGTGGCGTTCTTGCGCTACATTTGTCCTTTCAGCATTTTTTCATGTCTTT
CCGCGTGCATGTACTACTAACCTTAGGCATGCACTTTCAACTTCATCATGGCAAAAATTT
AGCGTTACTGCCAATTCAGCTGCACTGCATGTCAATATTTTGTTTGTAGGCTAGTACACA
TTGCAACGCTTAGCCTGAAATAAAGGTTGAAAAAAATAATACTCCCTTAAAAAAAAAAGA
AAAA

Homology of Contig U35_20028 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g46710.1	1351	0.0	protein\|transposon protein, putative, CACTA, En/Spm sub-class, expressed
Brachypodium v1_2	Bradi2g45437.1	1274	0.0
Arabidopsis v10	None