- Probe CUST_7395_PI390587928
- Source Contig U35_32006
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_7395_PI390587928 | Hv_44K_v2 | ACTTGTTTAGCACCTACGAGGCCAACGGCAACGTGGTGACTGCCAACTTCACCTCCTACG | 362 | GeneList: None MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.593 | 0.932 | 0.732 | 0.780 | 1.302 | 1.159 |
| Raw | 7.416 | 4.898 | 4.237 | 6.359 | 3.009 | 3.014 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK374189 | 2037 | 2e-24 | 505 - 564 | 100 | 60 / 60 | plus | ABC10778 ABC32013 |
| MLOC | MLOC_44072.1 | 2455 | 3e-21 | 2096 - 2155 | 97 | 58 / 60 | minus | ABC10778 ABC32013 ABC43508 |
| JLOC1 | JLOC1_28529.1 | 2089 | 2e-21 | 1730 - 1789 | 97 | 58 / 60 | minus | |
| Harvest35 | U35_32006 | 463 | 3e-25 | 363 - 422 | 100 | 60 / 60 | plus |
Contig Sequence (463 bp)
>U35_32006 463 Hv_44K_v2 CTTCATCCGGTACTGGAACCGCAAGGTGCCCAACAACCGCCCCCACCCGGCCTTCTTCGT CTCCAAGCTCTCCCCGCTGCCCGCCGCCGACGCTGCGTCCTTCCCCTCGTCGCTCCCCGA CATCCGCGCCCGCCTGCCCACGCTCTGCTCCAAGGCTGCTCTGCTATGCCCGTCGTCCTC TGGCTCTGAATCTGATGTGGCGGCAAGAAAGGGCCCGTTCACGGGCTACAGGGACGCCAA CTTCACCAACTACGGCTCCGGCGCCGGCGCCGGCACCGACGGGTTCAAGAACTACTCCCC CGACGTCAACATCGCCGGCGACTCGTTCCGCCGCTACGGCCGGGACTCGTCGGCCCGCGC CGACTTGTTTAGCACCTACGAGGCCAACGGCAACGTGGTGACTGCCAACTTCACCTCCTA CGCCGGCGGCGCCACGGGCGGGTCGGGCTCCTTCACCTCCTAC
Homology of Contig U35_32006 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os08g29200.1 | 628 | 7e-57 | protein|BURP domain containing protein, expressed |
| Brachypodium v1_2 | Bradi3g34950.1 | 624 | 3e-66 | |
| Arabidopsis v10 | None |