- Probe CUST_7391_PI390587928
- Source Contig U35_32009
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_7391_PI390587928 | Hv_44K_v2 | CCGAGTAGTTTACTATGCAGATAATTTATTTTTTGAAGGAAAGGGATTGCTCCACCTATT | 287 | GeneList: turquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.070 | 1.168 | 1.107 | 1.043 | 0.530 | 0.599 |
| Raw | 80.221 | 137.352 | 111.856 | 160.928 | 29.388 | 36.989 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK355158 | 3194 | 2e-24 | 700 - 759 | 100 | 60 / 60 | plus | ABC24637 |
| MLOC | MLOC_32983.1 | 887 | 2e-24 | 282 - 341 | 100 | 60 / 60 | plus | ABC24637 |
| MLOC | MLOC_32983.5 | 799 | 2e-24 | 222 - 281 | 100 | 60 / 60 | plus | ABC24637 |
| MLOC | MLOC_32983.3 | 1072 | 2e-24 | 230 - 289 | 100 | 60 / 60 | plus | ABC24637 |
| MLOC | AK358255 | 1715 | 3e-21 | 811 - 867 | 98 | 56 / 57 | plus | ABC24637 |
| Harvest35 | U35_32009 | 348 | 3e-25 | 288 - 347 | 100 | 60 / 60 | plus |
Contig Sequence (348 bp)
>U35_32009 348 Hv_44K_v2 TCTCTCTGCCCGCCATGCCACCAAACTGCCGCGATGCCGCTCGCCTCCGCCCGGCCGCCG CCGTCGGAGCAGGGCCCGAGCGCCTCCCACTCCTCCGCCCCGGCGGCGGACTCCTCCGTC GCGGCCCTCATCGGCGGCGAGGTGGTGACGCCGATGGTCGTGTTCGTCAACTCCAAGAGC GGCGGCCGACATGGGCCCGGGCTCAAGGTGCGGCTCCACGAGCTCATCAGCAAGGAGCAG GTGACGACCTGCACGCTCCAAGTAGCTCGGTAGATTTCATACATGCACCGAGTAGTTTAC TATGCAGATAATTTATTTTTTGAAGGAAAGGGATTGCTCCACCTATTT
Homology of Contig U35_32009 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |