barSeed - Barley Seed Development Database

Probe CUST_7387_PI390587928

Source Contig U35_47974

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7387_PI390587928	Hv_44K_v2	TCCTAATTTTGGGAATGGTAGCAATTTTGCATGCCTCTATCAGTCTATCCGTATACGCCA	0	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.932	2.104	1.226	0.734	0.373	0.466
Raw	383.008	647.715	327.503	301.576	55.285	75.051

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction
JLOC1	JLOC1_13733.3	1366	1e-22	1236 - 1294	98	59 / 60	plus
JLOC1	JLOC1_13733.2	1364	1e-22	1234 - 1292	98	59 / 60	plus
JLOC1	JLOC1_13733.1	1505	1e-22	1375 - 1433	98	59 / 60	plus
Harvest21	ABC49595	298	3e-25	1 - 60	100	60 / 60	minus
Harvest35	U35_47974	298	3e-25	1 - 60	100	60 / 60	minus

Contig Sequence (298 bp)

>U35_47974 298 Hv_44K_v2
TGGCGTATACGGATAGACTGATAGAGGCATGCAAAATTGCTACCATTCCCAAAATTAGGA
AACCCCAGTTTGATCAACGGAGATATGTACATCAGGCAACATTTCATCCGACCAAAATAG
AACTACCTACTTTTTTTTTTTTTTGTTTAAGGCATGCTGGGACAAAAAATGCTTTAAAGA
ATATTTGGGGCCTGTTCAGTCAGCCCAATGTCGATTCCATGCCGGGGCAAAATGACATGA
GCGGGGCCATGACCAGGGGAACAGTTTTTAAGTCATTCAGAGACTACGGGATGCTTTC

Homology of Contig U35_47974 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None