barSeed - Barley Seed Development Database

Probe CUST_7382_PI390587928

Source Contig U35_20030

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_7382_PI390587928	Hv_44K_v2	TGCTAGATGTATGAACTCTGATGGTTTGATATGTTTTTTCCTGGGAGAGATTTAGCCGTG	1253	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_12353.3	1260	2e-24	1201 - 1260	100	60 / 60	plus	ABC01962 ABC15877
MLOC	MLOC_12353.2	510	2e-24	29 - 88	100	60 / 60	minus	ABC15877
MLOC	MLOC_12353.1	1169	2e-24	35 - 94	100	60 / 60	minus	ABC01962 ABC15877
JLOC1	JLOC1_8289.1	1202	8e-25	1070 - 1129	100	60 / 60	plus
Harvest21	ABC15877	1181	3e-25	1088 - 1147	100	60 / 60	plus	ABC15877
Harvest35	U35_20030	1347	3e-25	1254 - 1313	100	60 / 60	plus

Contig Sequence (1347 bp)

>U35_20030 1347 Hv_44K_v2
ACGACACTCCACTCCAGCCATAGGCCCGTAGCCAAGCGGCGGCGGCTCCGGGCAACGCAG
CTAGCAGGAGGAGAGAGATGAGGAAGGCGGCCGCGGCCTCGCGCTACGCCTCCTACGACG
ACTCCCCGTCGCCCTCCCCGTCCCCGCGCCGCGCCGCGGCCGCGTCAGGGACGCCGGGGC
AGCACGGGGGCCGGGCGCTGGTCGCGGTCAGATCCGGCCGCGGCGACCTGCGCTGCCAGG
CGCCGCAGCCGCACGGCAACCTGGGCTCTGTCCTCCGGAGGCTCATCTCCATGGAGAAGA
AGCCCAGCGCCAAGAACCTCCTCCCCGTCCCTCCCGCCGCCGCCGCCGCCCCCGCGAAGA
ACGGCAGCGGGGCCAAGCTGCCGGGGCTGTCGCGGAAGCTGTTCCAGAAGGCGCCGTCGG
AGACCAAGAGGAAGGCCCTGACGGAGGTCAAGAACAGCGGCAACGCCAACACGCGGACGC
TCGCCATGGTGCTGCGCAGCGAGCGGGAGCTCCTGTCGCAGAGCAAGGAGCAGGAGGACG
AGATCGCCGCTCTCCGCCTCCAGCTCCAGCAGAAGGACAAAGAGGTAGAGCGGCTCAAGG
ACCTGTGCCTGCGCCAGCGGGAGGAGATCAGCACGCTCAAGGACGCCGTCCTGTTCCCGG
ACACGGAGCCGGACCGCCACGTCCGGGATGAGATCTCAACTCTCACCGGGCAGATCCAAT
GCCTTGCCGAGGAGCTCGCCCAGGTAAAGGCGCGAGAAGAACACCTGAAGATCATGTTGT
GATGATGAATATTGCTCCTACCCAAGCACGCCCGTGCTTAACGAGGAGACTGCCTTCTCT
CTGGAGTGCAGCATCGGCGAAGCAGAGACGCCACCAAACTACGGTAGCCCCGACGAAATG
TTCGTCAAGGATCTCAACCCCTGCTTAACCCCTTTTTCCAAGAGCAGATCCGAGGAGTAC
GAGGAATCCTTGAGCTCTCACCGCATCAAGGGGAGGCCAGACCCCCACCTCTCCAGCTCA
CGCCTCAGGCCGATGTCGAAGAGCTCCGACAACCACCACAAGCCCATCTCGGGCACCGGG
AGCAGCAAGCGGCGAGTGCATCGGACCGACCAAGACAAGGTCTACCAGAACCTGTTTTAG
ACCGTGAGTGAGCTCGGGGGTCAGAGTTGTTGTGTAATAACGGTGCTAGTGCTATGTTGT
GCGTGCGTGTGGTTGTGATCTTGGCTGTGCTTTGGTTCTTGATGGTTGATGCCTGCTAGA
TGTATGAACTCTGATGGTTTGATATGTTTTTTCCTGGGAGAGATTTAGCCGTGAAAAAAA
AAAAAAAAATAAAAAAAAAAAAAAAAA

Homology of Contig U35_20030 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g08460.1	369	1e-93
Arabidopsis v10	None